Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0330
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   4.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 158  FVL-SLAV-LRAVQAGLHQCHHRRDL 87
            FVL SLAV L    AGL  C H RDL
Sbjct: 1079 FVLHSLAVELEHGAAGLRLCLHHRDL 1104


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 428 VVENDINAGSSHYIIGPFQNKSYETVVVRVEI 523
           +  N +   S+   I PF+N+S   V+V   +
Sbjct: 256 ISRNGVRLSSARAFITPFENRSNLHVIVNATV 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,878
Number of Sequences: 438
Number of extensions: 4154
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)