Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0330
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2...    32   0.46 
At1g27720.1 68414.m03388 transcription initiation factor IID (TF...    30   1.9  

>At2g29110.1 68415.m03538 glutamate receptor family protein (GLR2.8)
            (GLUR9) plant glutamate receptor family, PMID:11379626
          Length = 947

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 608  SHFRNSAGVNFTSQPLT--VPSQSXRQTVTLFPHEPRQSRSFCFERV 474
            SH   S+ V+  S P+T  +PS S  Q +   PH P Q R+F   RV
Sbjct: 873  SHTFKSSAVHHVSSPMTQYIPSPSTLQ-IAPRPHSPSQDRAFELRRV 918


>At1g27720.1 68414.m03388 transcription initiation factor IID
           (TFIID) component TAF4 family protein contains Pfam
           profile PF05236: Transcription initiation factor TFIID
           component TAF4 family
          Length = 682

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = -3

Query: 650 WLLFCWAR--SKPGSGSHFRN-SAGVNFTSQ---PLTVPSQSXRQTVTLFPHEPRQSRSF 489
           W L   AR  S PG G + +  S G  F      P  V S S +  + +   EP+ SRS 
Sbjct: 610 WKLMAEARQRSSPGPGRNSKKLSGGTQFGKNQGLPKVVRSISVKDVIAVVEKEPQMSRST 669

Query: 488 CFERVQLYNGNC 453
              RV  YN  C
Sbjct: 670 LLYRV--YNRIC 679


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,292,438
Number of Sequences: 28952
Number of extensions: 334091
Number of successful extensions: 936
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)