Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0327
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 52 9e-08
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 28 1.3
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 27 1.7
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo... 27 3.0
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 25 7.0
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.2
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.2
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 25 9.2
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 51.6 bits (118), Expect = 9e-08
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +3
Query: 6 SGVEFTSGITSNQES-GKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGL 182
+GV F ++ NQ++ G + G L + F K GLT ++ W T N L + + + ++ A GL
Sbjct: 36 NGVVFN--VSGNQDAKGVISGKLETSFNDKANGLTISQGWTTANVLESKVGLSEQFAPGL 93
Query: 183 KVTLEGTFAPQTGTKTGKL 239
+ + TF+P T KT L
Sbjct: 94 HLNVNTTFSPATAAKTAIL 112
Score = 32.3 bits (70), Expect = 0.061
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +2
Query: 326 LNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKL 502
+ ++G+LAG +D QK S +GY + ++ N F S Y +VS +
Sbjct: 140 VGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDV 199
Query: 503 DCASH 517
+ +
Sbjct: 200 EAGGN 204
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 356 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 496
H Q A F+K++ LGY+ AL++ DN + + K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 523 GRRVRPTHYSELERSTRWTKTRLCTPKLTTSP 618
G V+PT SE+++ T W K L P T+SP
Sbjct: 45 GLLVKPTMLSEVQKPTLWEK--LTKPASTSSP 74
>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -2
Query: 358 VYTSQPTLVV*YC---CNVYNWTGQVQIQVSVHCYCVMVNEVFNFPVLV 221
+ T QP+ +V C Y+ G + + H CV FN P+LV
Sbjct: 267 INTFQPSAIVLQCGADSLGYDRLGVFNLSIHAHGECVRFTRSFNIPMLV 315
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 34 PPTRKAERFLAAFPPNLQ 87
P T+KA +FPPNLQ
Sbjct: 394 PETQKARAAFESFPPNLQ 411
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 135 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 233
T+A D++ ++ A VTLEGT +TG TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 21 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 146
T+G + +G V G LS + + F EK++ + LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 384 FAFCVSNWVCTPASQPW*FSTAATSTTG 301
F F S+W P +PW FST A G
Sbjct: 1677 FNFAKSHW--EPVIEPWTFSTTAIMKDG 1702
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 57 VFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 146
V +L S +K + LTF +W + +AT
Sbjct: 194 VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,397
Number of Sequences: 5004
Number of extensions: 51515
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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