Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0327
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 40 0.002
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 36 0.027
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 36 0.027
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 36 0.036
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 31 1.0
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 30 1.8
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037... 29 4.1
11_06_0513 + 24466131-24469487 28 5.4
06_03_0399 - 20403488-20405092 28 5.4
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 28 7.2
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 7.2
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 27 9.5
03_02_0578 + 9603118-9605633,9605766-9605781 27 9.5
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 39.9 bits (89), Expect = 0.002
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +2
Query: 233 KIEDLIHHDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALG 412
K+E H+ +N ++ L+ + P+V+++ V + GV FDT + F+K N AL
Sbjct: 104 KLELQYLHEYAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALS 162
Query: 413 YQSGDF--ALHTNVDNGKDFGGSIYQKVSDKLDCA-SHEVDGGFGRH 544
+ D +LH N ++G S Y V + A E+ F R+
Sbjct: 163 LTNSDLIASLHLN-NHGDTLIASYYHLVKHHSNTAVGAELSHSFSRN 208
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 35.9 bits (79), Expect = 0.027
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +2
Query: 254 HDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFA 433
H +N + L+ A P+V + V + G FDT F+K N L + + D
Sbjct: 265 HPHAGLNAIVGLN-ANPLVSFSGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLT 323
Query: 434 LHTNVDN-GKDFGGSIYQKVS 493
++N G S Y KVS
Sbjct: 324 AALLLNNKGDSLAASYYHKVS 344
>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 35.9 bits (79), Expect = 0.027
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +2
Query: 254 HDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFA 433
HD A+N+ + L + P++++AA + AG FD+ A +K N + Y DF+
Sbjct: 824 HDHFALNSTIGLT-STPLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFS 882
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 35.5 bits (78), Expect = 0.036
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +2
Query: 215 DWN*NWKIEDLIHHDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSK 394
D+N + K+E H+ + T + + PVV+ + QG G FDT KF+K
Sbjct: 137 DYN-SGKVEMQYFHENASFATAVGMK-PSPVVEFSGTAGAQGLAFGAEAGFDTATGKFTK 194
Query: 395 NNFALGYQSGDF 430
+ A+G D+
Sbjct: 195 YSAAIGVTKPDY 206
>03_01_0005 +
46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = -1
Query: 386 TLLFVYQTGCVHQPANPGSLVLL 318
TLLFVYQTG P PG L+LL
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLL 715
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +2
Query: 254 HDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFA 433
HD ++ + L + P+V+++ V + G DT F+K + L + D A
Sbjct: 218 HDYAGISLGVGLT-SKPLVNLSGVFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLA 276
Query: 434 LHTNVDN-GKDFGGSIYQKVSDKLDCAS 514
++N G S Y V+ + A+
Sbjct: 277 ADLTLNNKGDSLTASYYHLVNKESGTAA 304
>08_02_1207 -
25302186-25302275,25303089-25303141,25303400-25303788,
25303968-25304338,25304362-25304502
Length = 347
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 398 CSWRTLLFVYQTGCVHQPANPGSLVLLQRLQLD 300
CSW + + TG V P+ G L LLQ +QL+
Sbjct: 34 CSWDSGIICSDTGHVPIPSALGDLPLLQTIQLE 66
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -1
Query: 455 HCLRLCGEQSHQIGNLEQS-CSWRTLLFVYQTGC---VHQPANPGSLVLLQRLQLD 300
H LR IG L S CS R L + + C P N GS+ LQRL L+
Sbjct: 686 HSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCEKLTKLPQNIGSVTSLQRLDLE 741
>06_03_0399 - 20403488-20405092
Length = 534
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +2
Query: 317 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVS 493
AA + GW+ GV+ + + +K + + + Y+ D ++ + D G + Y+K +
Sbjct: 439 AAAAKHMGWIRGVYGEMEPYVSKNPRGAY-VNYRDLDLGVNDDGDGGGGVARARYEKAT 496
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 9 GVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNT 137
G++F SG+ S + V L+ + A+KDY T+ N D T
Sbjct: 290 GLQFLSGVISGGNACCVAMLLAFREAIKDYSTPSTKTLNRDLT 332
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 250 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 122
++V + VL + C + SR+ L PA+ LSW S LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 520 SGRRVRPTHYSELERSTRWTKTRLCTPKLTTSP 618
S + + TH++ RS+ ++ +RLC P TT+P
Sbjct: 349 SSAKAQGTHHASSVRSS-FSNSRLCLPSRTTNP 380
>03_02_0578 + 9603118-9605633,9605766-9605781
Length = 843
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -3
Query: 468 PKSLPLSTFVWRAKSPDW*PRAKLFLENFAFCVSNWVCTPASQPW*FSTAATSTTGPA 295
PK P + +WR PDW FL +F N V +PA + S ATS T P+
Sbjct: 223 PKVTPNNDTLWRTWLPDW-----TFLHESSFAAHNQV-SPAMIKY-QSGYATSLTAPS 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,118
Number of Sequences: 37544
Number of extensions: 370920
Number of successful extensions: 1091
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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