Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0327
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0) 96 2e-20
SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041) 45 6e-05
SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06) 28 5.6
SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5) 28 5.6
SB_59014| Best HMM Match : CCT (HMM E-Value=6.4) 28 7.4
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
Length = 379
Score = 96.3 bits (229), Expect = 2e-20
Identities = 40/80 (50%), Positives = 61/80 (76%)
Frame = +3
Query: 3 ESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGL 182
++GVEF + +S ++GKVFGSL +K+ DYG++ +EKW TDN L+++IT++D+IA GL
Sbjct: 132 KNGVEFKTAGSSMNDTGKVFGSLETKYKYSDYGISLSEKWTTDNVLSSEITVEDQIAKGL 191
Query: 183 KVTLEGTFAPQTGTKTGKLK 242
K+ + TFAP TG K+ K+K
Sbjct: 192 KLQFDTTFAPNTGKKSAKIK 211
Score = 88.2 bits (209), Expect = 5e-18
Identities = 40/104 (38%), Positives = 61/104 (58%)
Frame = +2
Query: 203 FCPTDWN*NWKIEDLIHHDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKA 382
F P + KI+ D + ++D D AGP V +AV+ Y+GW AG +DT K+
Sbjct: 199 FAPNTGKKSAKIKTAYKQDYLHATGDVDFDFAGPTVQGSAVVGYEGWHAGYQVAYDTSKS 258
Query: 383 KFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCAS 514
K NNF+LGY++ DF +H+ V++ F GSIY ++S L+ A+
Sbjct: 259 KLIANNFSLGYRAKDFQIHSAVNDASKFTGSIYHQISKNLEVAA 302
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 507 ARHMKWTAGSADTLFGVGAKYALDQDASLHAQVNNKSLIGL 629
A + W GS++T F G KY +D+D +L A+VNN S +GL
Sbjct: 301 AAQLNWATGSSNTSFQGGCKYDVDKDTTLRAKVNNNSHLGL 341
>SB_4373| Best HMM Match : Porin_3 (HMM E-Value=0.0041)
Length = 187
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +3
Query: 507 ARHMKWTAGSADTLFGVGAKYALDQDASLHAQVNNKSLIGL 629
A + W GS++T F G KY +D+D +L A+VNN S +GL
Sbjct: 109 AAQLNWATGSSNTSFQGGCKYDVDKDTTLRAKVNNNSHLGL 149
>SB_12387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1096
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 529 RVRPTHYSELERSTRWTKTRLCTPKLTTSPSSVLG 633
RVR H ++LE +TRW + T K+ P + LG
Sbjct: 976 RVRKKHNTKLEENTRWRPEIMSTVKVVIVPGNGLG 1010
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 425 DFALHTNVDNGKDFGGSIYQKV 490
++ +H ++ G+D+GGS YQ+V
Sbjct: 394 EYGIHLSLTVGRDYGGSYYQQV 415
>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 24 SGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 167
SG+ +ESG+ SL+ A L T+ NTD T TD T Q+K
Sbjct: 65 SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111
>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
Length = 672
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -2
Query: 286 IQVSVHCYCVMVNEVFNFPVLVPVCG-AKVPSRVTLRPAAILSWIVMSVANVLSVFHFSV 110
I + V ++ + V N V+ CG A+ P L ++ +V +++ LSV + +
Sbjct: 30 ILLGVFAATILGSLVGNIAVIRATCGMARTPVTYILVMNMAVAELVYTLSMSLSVIYLEL 89
Query: 109 KVXP*SFTANLEERLPKTFPLSWLEVIP 26
+ P F L + + +P+ + VIP
Sbjct: 90 EYWPYGFRCKLSDIGYRPYPILFPIVIP 117
>SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5)
Length = 291
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 272 NTNLDLDLAGPVVDVAAVLNYQG--WLAGVHTQFDTQKAKFSKNNF 403
N L +DL V V VL + WL +T F+T+K K +KN+F
Sbjct: 95 NLQLYIDLGLKVTKVYRVLEFDQSPWLKQ-YTNFNTEKRKNAKNSF 139
>SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)
Length = 249
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 485 SGRLNRRNLYHCLRLCGEQSHQIGNLEQSCSWRTLLFVYQTGCVHQ 348
S R+NRR + H +R C + + G + C+W + T VH+
Sbjct: 157 STRMNRR-IRHLVRRCCKLGAKGGEMGFDCNWDRFTALQYTNIVHR 201
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +3
Query: 129 DNTLATDITI--QDKIAAGLKVTLEGTFAPQT 218
++TLA +ITI + +A G + E TFAP+T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET 1755
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,695,013
Number of Sequences: 59808
Number of extensions: 420205
Number of successful extensions: 1089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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