Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0324
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   5.6  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   9.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 193 GNGPSDLSTASR 228
           GNGP DLS +SR
Sbjct: 238 GNGPLDLSVSSR 249


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 208 PKAHCPN*GKTNGIPPRIALLPSKTAC 128
           P  + PN   T+  PP   L  SK  C
Sbjct: 60  PSGNTPNKSSTSPYPPNHPLSGSKHLC 86


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 3   KMAATSVVVLDRGNNTT 53
           KMAA ++     GN+TT
Sbjct: 287 KMAAQAIAFFSAGNDTT 303


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,067
Number of Sequences: 336
Number of extensions: 3556
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)