Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0324
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    28   1.1  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    27   2.6  

>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = -3

Query: 523 RSCQ*HAAVHAGDLTAAHVR------HLEVSVEQQLTAKRQLLARVVHADVEVELLLTQD 362
           RS +    V AGDL  +++       H E  +  ++   R++L R+VH  + +E+    D
Sbjct: 802 RSTEGVDGVPAGDLVQSYLELREDQFHTEEDIIYEVGLVRKVLTRLVHESIIMEIQNLTD 861

Query: 361 QPVRQP 344
             VR P
Sbjct: 862 SAVRLP 867


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 260 ERLPSGDVEAVFSLMDDEFTRSMWHFQFRLTYRLI 364
           +RLPS D   +   + D F R++ H Q   +Y+ I
Sbjct: 559 QRLPSSDCSKILKCLLDGFVRNVAHLQNDGSYKTI 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,628
Number of Sequences: 5004
Number of extensions: 56072
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)