Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0324
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1436 + 33591570-33591728,33594027-33594101,33594487-335945... 73 3e-13
04_04_1059 + 30467324-30467452,30469008-30469082,30469439-304694... 72 4e-13
08_01_0875 - 8584345-8584556,8584653-8584752,8584837-8584939,858... 71 9e-13
09_02_0467 - 9602816-9602881,9603016-9603097,9603184-9603291,960... 67 1e-11
01_06_0131 - 26785733-26785816,26785990-26786092,26786411-267865... 66 2e-11
05_07_0168 + 28122429-28122650,28122651-28122725,28123066-281231... 64 1e-10
02_01_0572 - 4220947-4221167,4221339-4221438,4221525-4221627,422... 39 0.004
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056 30 1.6
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 30 2.1
01_06_0450 + 29472531-29472838,29472998-29473092,29473195-294732... 30 2.1
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 29 2.7
12_01_0899 - 8689125-8689383,8689540-8689826 29 3.6
07_03_0426 + 18075192-18075375,18075733-18076040 29 4.8
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 28 6.3
07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415... 28 8.4
>04_04_1436 +
33591570-33591728,33594027-33594101,33594487-33594543,
33594635-33594795,33594954-33595094,33595344-33595446,
33595535-33595634,33595745-33595983
Length = 344
Score = 72.5 bits (170), Expect = 3e-13
Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +3
Query: 24 VVLDRGNNTTCTVNLFGATVVSWR-VNNQEQLFVSKQAVFDGKRAIRGGIPFVFPQFGQW 200
VVL ++ V L+G V SW+ + +E LFVS +A+F +AIRGGIP FPQF +
Sbjct: 42 VVLREVRGSSAEVYLYGGHVTSWKDEHGEELLFVSNKAIFKPPKAIRGGIPICFPQFSNF 101
Query: 201 AFGPQHGFARVARWHVEKCPSDCPAAT 281
HGFAR W VE P P T
Sbjct: 102 GNLDPHGFARNRTWSVENDPPPFPVPT 128
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Frame = +2
Query: 425 FSCQLLLHTYFKVPDVRRCQITGMHGCMSLTRTREGAVYQETRXVVTVGEWTDRI---LP 595
FS HTYF + D+ ++ G+ L +E Y E + DRI P
Sbjct: 182 FSFTFAYHTYFSISDISEVRVEGLETLDYLDNLQERNRYTEQGDAIVFESELDRIYLGTP 241
Query: 596 EHDAGAHHKRTLSAGGRCRITEVQLSPNTVIWXP 697
A H++ R + P+ V+W P
Sbjct: 242 SKIAIIDHEKK-----RTFVVRKGGLPDAVVWNP 270
>04_04_1059 +
30467324-30467452,30469008-30469082,30469439-30469495,
30469587-30469747,30469850-30469990,30470148-30470191,
30470854-30470972,30471039-30471138,30471347-30471453,
30471944-30471991
Length = 326
Score = 72.1 bits (169), Expect = 4e-13
Identities = 37/87 (42%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +3
Query: 24 VVLDRGNNTTCTVNLFGATVVSWRVNN-QEQLFVSKQAVFDGKRAIRGGIPFVFPQFGQW 200
VVL + V+L+G V SW+ + E LFVS +A F +AIRGGIP FPQFG
Sbjct: 32 VVLREARGFSAEVHLYGGQVTSWKNDRGDELLFVSSKATFKPPKAIRGGIPICFPQFGTH 91
Query: 201 AFGPQHGFARVARWHVEKCPSDCPAAT 281
+HGFAR W ++ P P +T
Sbjct: 92 GILEKHGFARNRFWAIDDNPPPFPTST 118
>08_01_0875 -
8584345-8584556,8584653-8584752,8584837-8584939,
8585505-8585645,8585756-8585916,8585997-8586053,
8586401-8586475,8587747-8587986
Length = 362
Score = 70.9 bits (166), Expect = 9e-13
Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +3
Query: 60 VNLFGATVVSWRVNNQEQL-FVSKQAVFDGKRAIRGGIPFVFPQFGQWAFGPQHGFARVA 236
V L+GA V SW+ ++ E+L FVS +A+F +AIRGGIP FPQFG QHGFAR
Sbjct: 81 VYLYGAQVTSWKNDHAEELLFVSSKAIFKPPKAIRGGIPICFPQFGTHGNLEQHGFARNR 140
Query: 237 RWHVEKCPSDCP 272
W ++ P P
Sbjct: 141 LWTIDDNPPPLP 152
Score = 27.9 bits (59), Expect = 8.4
Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 5/129 (3%)
Frame = +2
Query: 326 MWHFQFRLTYRLILREK-ELHFNIGVYNPSKE-LTFSCQLLLHTYFKVPDVRRCQITGMH 499
+W F R+ L +L + N + + +FS HTYF V D+ ++ G+
Sbjct: 174 IWPHSFEFRLRVALGPNGDLSLTSRIRNTNTDGRSFSYTFAYHTYFSVSDISEVRVEGLE 233
Query: 500 GCMSLTRTREGAVYQETRXVVTVGEWTDRI---LPEHDAGAHHKRTLSAGGRCRITEVQL 670
L + + E + D++ P A H++ R + +
Sbjct: 234 TMDYLDNLKGKERFTEQGDAIVFESEIDKVYLAAPSKIAIIDHEKK-----RTFVLTKEG 288
Query: 671 SPNTVIWXP 697
P+ V+W P
Sbjct: 289 LPDAVVWNP 297
>09_02_0467 -
9602816-9602881,9603016-9603097,9603184-9603291,
9603803-9603900,9603986-9604084,9604202-9604339,
9604748-9604799,9604876-9604989,9605054-9605142,
9605674-9605707,9605900-9606019,9606138-9606220
Length = 360
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/88 (42%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = +3
Query: 60 VNLFGATVVSWRV-NNQEQLFVSKQAVFDGKRAIRGGIPFVFPQFGQWAFGPQHGFARVA 236
+ LFGA V SW+V + ++ LFV AVF+G++ I GGIP FPQFG QHGFAR
Sbjct: 113 IYLFGACVTSWKVPSGKDLLFVRPDAVFNGQKPISGGIPHCFPQFGPGTM-QQHGFARNM 171
Query: 237 RWHV--EKCPSDCPAATWKLSSALWTMS 314
W + + PA T +L ++ S
Sbjct: 172 NWSITDSEANEGDPAVTLELKDDSYSRS 199
Score = 53.2 bits (122), Expect = 2e-07
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 5/146 (3%)
Frame = +2
Query: 275 GDVEAVFSLMDDEFTRSMWHFQFRLTYRLILREKELHFNIGVYNPSKELTFSCQLLLHTY 454
GD L DD ++RSMW F F+ Y++ L L + + N + + FS LH+Y
Sbjct: 183 GDPAVTLELKDDSYSRSMWDFSFQALYKVALHSTSLSTTLKITN-TDDKPFSFNSALHSY 241
Query: 455 FKVPDVRRCQITGMHGCMSLTR---TREGAVYQETRXVVTVGEWTDRILPEHDAGAHHKR 625
F + + G+ GC +L + + +E R VT + D I GA +
Sbjct: 242 FSA-SISGVSVKGLKGCKTLNKDPDPKNPLEGKEEREEVTFPGFVDCIY----LGAPSEL 296
Query: 626 TL--SAGGRCRITEVQLSPNTVIWXP 697
TL G + I+ S + V+W P
Sbjct: 297 TLDNGLGDKIVISNANWS-DAVLWNP 321
>01_06_0131 -
26785733-26785816,26785990-26786092,26786411-26786545,
26787234-26787397,26787542-26787598,26788201-26788275,
26788410-26788511
Length = 239
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +3
Query: 24 VVLDRGNNTTCTVNLFGATVVSWRVNNQEQL-FVSKQAVFDGKRAIRGGIPFVFPQFGQW 200
V++ + V+L G VVSWR + E+L F S +A+F +A+RGGIP FPQFG
Sbjct: 23 VMIRSPRGASVLVSLHGGQVVSWRNDRGEELLFTSSKAIFKPPKAMRGGIPICFPQFGNC 82
Query: 201 AFGPQHGFARVARWHVE 251
QHGFAR W ++
Sbjct: 83 GTLEQHGFARNRLWAID 99
>05_07_0168 +
28122429-28122650,28122651-28122725,28123066-28123122,
28123248-28123411,28123672-28123806,28123908-28124010,
28124165-28124264,28124348-28124556
Length = 354
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 VNLFGATVVSWRVNNQEQL-FVSKQAVFDGKRAIRGGIPFVFPQFGQWAFGPQHGFARVA 236
V+L G V+SWR + E+L F S +A+F +A+RGGIP FPQFG QHGFAR
Sbjct: 75 VSLHGGQVLSWRNDRGEELLFTSSKAIFKPPKAMRGGIPICFPQFGNSGTLEQHGFARNR 134
Query: 237 RWHVEK 254
W +++
Sbjct: 135 IWALDE 140
>02_01_0572 -
4220947-4221167,4221339-4221438,4221525-4221627,
4221896-4222036,4222162-4222319,4222752-4222826,
4222852-4222910,4223085-4223183,4223464-4223596
Length = 362
Score = 38.7 bits (86), Expect = 0.004
Identities = 26/86 (30%), Positives = 37/86 (43%)
Frame = +3
Query: 63 NLFGATVVSWRVNNQEQLFVSKQAVFDGKRAIRGGIPFVFPQFGQWAFGPQHGFARVARW 242
NL G+ + + + N + Q +F + R + FV +FG QHGFAR W
Sbjct: 82 NLTGSLLSFFFLRNGQVFLYGGQVIF-WENEYREQLLFVSRKFGNHGVLEQHGFARNRLW 140
Query: 243 HVEKCPSDCPAATWKLSSALWTMSSP 320
V++ P PA T L SP
Sbjct: 141 SVDETPPPFPATTSNCHIDLILKQSP 166
>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
Length = 1109
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -2
Query: 503 SRACR*SDSGARPAP*SKCGAATDS*TSAPCSGCTRRC*SGAPS 372
S +C G KCGA S TS+P SGC+ C +G S
Sbjct: 752 SLSCENPKCGGGGGGGGKCGAFHMSATSSPPSGCSSSCVTGCSS 795
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 32 RQRQQYNMYRKSFRCYCSVMEGEQPRAIIC*QTSRFRRQEGNTR 163
R Q N++ K F+ YC+ P ++C + + R++ N +
Sbjct: 1606 RINQDCNIWLKIFKVYCTTQPSSLPTLLLCQKLASLARKQSNLK 1649
>01_06_0450 +
29472531-29472838,29472998-29473092,29473195-29473262,
29473347-29473390,29473467-29473544,29473657-29473810,
29474290-29474376,29474653-29474805,29474890-29475000,
29475211-29475276,29475364-29475543
Length = 447
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 385 LQHRRVQPEQGADV*LSVAAPHLLQGAGRAPLSDHRHARLHVIDKNAGRCRVPG 546
L RR P + AP + +G AP++D A+ V+ AG R PG
Sbjct: 27 LAARRPPPPAAEEAGAEAPAPEAAESSGAAPVADEGPAKPAVLLTCAGGIRAPG 80
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 295 EDSFHVAAGQSLGHFSTCQRATRAKPC*GPK 203
ED++ VA G S FS C+RA P P+
Sbjct: 60 EDAYAVAVGCSCSSFSCCRRALMLSPASAPR 90
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 394 RRVQPEQGADV*LSVAAPHLLQGA-GRAPLSDHRHARLHVIDKNAGRCRVPGDPRXGHGR 570
R QP +GA L + A +GA R PL + ARL + + G +P +P G
Sbjct: 6 RLPQPARGAAARLLLPASGAARGAVARLPLPEPPCARLLLPEPPWGMAALPPEPPWGAAA 65
Query: 571 RVDGPH 588
PH
Sbjct: 66 HPPAPH 71
>07_03_0426 + 18075192-18075375,18075733-18076040
Length = 163
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/76 (22%), Positives = 35/76 (46%)
Frame = +2
Query: 365 LREKELHFNIGVYNPSKELTFSCQLLLHTYFKVPDVRRCQITGMHGCMSLTRTREGAVYQ 544
+ E+ H +K++ ++ + L T P R + G+H C S+ +G+ +
Sbjct: 18 VEEESAHAQPAAVYANKKMVYAAKAQL-TRLVRPSQSRDGLHGIHDCGSVIAQFDGSESR 76
Query: 545 ETRXVVTVGEWTDRIL 592
+ R V+T+ W+ L
Sbjct: 77 KLRIVLTLTTWSQPTL 92
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = -3
Query: 535 GTFPRSCQ*HAAVHAGDLTAAHVRHLEVSVEQQLTAKRQLLARVVHADVEVELLLTQDQP 356
G F + + H D T +V HL +S E LTA+ L V D E L D
Sbjct: 443 GNFGAAYEFSDKCHPLDPTLTNVDHLSISEESSLTAQFVSLEPAVDTDACPESLAVADAT 502
Query: 355 V 353
V
Sbjct: 503 V 503
>07_03_1405 +
26340645-26340921,26341003-26341226,26341315-26341562,
26341622-26342051,26342630-26343049
Length = 532
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 168 IPFVFPQFGQWAFGPQHG--FARVARWHVEKCPSDCPAATWKLS 293
IPFV PQF QW P +G F W + C +D A LS
Sbjct: 78 IPFVQPQFRQWI--PLYGRVFLYWFGWTPDMCVADVEVAKQVLS 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,300,173
Number of Sequences: 37544
Number of extensions: 443736
Number of successful extensions: 1344
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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