Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0324
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)                      51   1e-06
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)               32   0.52 
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)             32   0.52 
SB_42225| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 31   0.92 
SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)          29   4.9  

>SB_30648| Best HMM Match : PsbI (HMM E-Value=6.2)
          Length = 372

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = +2

Query: 425 FSCQLLLHTYFKVPDVRRCQITGMHGCMSLTRTREGAVYQETRXVVTVGEWTDRI 589
           F    LLHTYF++PDV +  +TG+ G   + + + G + +ETR  V V   TDR+
Sbjct: 27  FDFTTLLHTYFRIPDVTKTTVTGLRGASYVDKLQNGDICKETRDFVQVDCHTDRV 81


>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
          Length = 442

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 244 CQRATRAKPC*GPKAHCPN*G-KTNGIPPRIALLPSKTAC-LLTNNCS 107
           C    +AK C     HCP+ G  T+ I PRI  LP++  C +++  CS
Sbjct: 322 CNLICQAKLC---YPHCPSGGCVTSNIKPRIVALPTRVRCEVISGGCS 366


>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
          Length = 489

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -3

Query: 244 CQRATRAKPC*GPKAHCPN*G-KTNGIPPRIALLPSKTAC-LLTNNCS 107
           C    +AK C     HCP+ G  T+ I PRI  LP++  C +++  CS
Sbjct: 322 CNLICQAKLC---YPHCPSGGCVTSNIKPRIVALPTRVRCEVISGGCS 366


>SB_42225| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 300

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 183 PQFGQWAFGPQHGFARVARWHVEKCPSDCPAATWKLSSALWTMSSPGR 326
           P FG   F  +    R+    +  CP DCPA+ ++L    W +  P R
Sbjct: 238 PHFG---FSNEDVMFRLRECILLPCPVDCPASVYRLMKECWDILPPSR 282


>SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 894

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 448 HLLQGAGR----APLSDHRHARLHVIDKNAGRCRVPGDPRXG 561
           H+++G+GR     P S + ++R+H  DKN    +V  +P  G
Sbjct: 366 HVVRGSGRFIPTPPFSHYMYSRIHTRDKNCQPKKVDREPYTG 407


>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
          Length = 1515

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/39 (48%), Positives = 22/39 (56%)
 Frame = -3

Query: 490 GDLTAAHVRHLEVSVEQQLTAKRQLLARVVHADVEVELL 374
           GDLT    R   +S  QQ    R  LAR V+ADVE+ LL
Sbjct: 680 GDLTVIGERGASLSGGQQ---SRVSLARAVYADVEIYLL 715


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,903,291
Number of Sequences: 59808
Number of extensions: 486330
Number of successful extensions: 1364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)