Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0324
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 313 LIVHKAEDSFHVAAGQSLGHFS 248
           +I   A+DSFH  +  +L H S
Sbjct: 212 IIYQNADDSFHRLSSHTLNHNS 233


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/36 (25%), Positives = 15/36 (41%)
 Frame = +3

Query: 198 WAFGPQHGFARVARWHVEKCPSDCPAATWKLSSALW 305
           W +  Q     + + +    P DCP A ++L    W
Sbjct: 840 WNWSNQDVIKSIEKGYRLPAPMDCPEAIYQLMLDCW 875


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 422 SAPCSGCTRRC*SGAP 375
           S  CSG T RC +G P
Sbjct: 289 STTCSGHTVRCFTGGP 304


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 581 DRILPEHDAGAHHKRTLSAGGRCRITEVQLSPNT 682
           D +LP++    HH++  S+     I     SP T
Sbjct: 3   DSMLPKYHQQFHHQQLFSSANPGTIQACTTSPAT 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,252
Number of Sequences: 438
Number of extensions: 4425
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)