Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0323
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    57   1e-10
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    57   1e-10
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    57   1e-10

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
 Frame = -1

Query: 260 IKDRYKVFLDLFNLSTFLLPRALIPPLDEDMKRSLNLTWGD----NVRENGD 117
           + DRYKVF+DLFNLSTFL+PR+ IPPL   M+  L   WG     N+  NG+
Sbjct: 177 LSDRYKVFVDLFNLSTFLIPRSYIPPLSTSMRSHL-CNWGSANSTNIVSNGN 227



 Score = 24.6 bits (51), Expect = 0.85
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 346 NHVIMVQRMIXXXXXXXXXXXXXXXLRSTLRIVTKSFL 233
           NHV+MVQRMI               LRSTL    K F+
Sbjct: 148 NHVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDRYKVFV 185


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
 Frame = -1

Query: 260 IKDRYKVFLDLFNLSTFLLPRALIPPLDEDMKRSLNLTWGD----NVRENGD 117
           + DRYKVF+DLFNLSTFL+PR+ IPPL   M+  L   WG     N+  NG+
Sbjct: 337 LSDRYKVFVDLFNLSTFLIPRSYIPPLSTSMRSHL-CNWGSANSTNIVSNGN 387



 Score = 24.6 bits (51), Expect = 0.85
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 346 NHVIMVQRMIXXXXXXXXXXXXXXXLRSTLRIVTKSFL 233
           NHV+MVQRMI               LRSTL    K F+
Sbjct: 308 NHVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDRYKVFV 345


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 57.2 bits (132), Expect = 1e-10
 Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
 Frame = -1

Query: 260 IKDRYKVFLDLFNLSTFLLPRALIPPLDEDMKRSLNLTWGD----NVRENGD 117
           + DRYKVF+DLFNLSTFL+PR+ IPPL   M+  L   WG     N+  NG+
Sbjct: 337 LSDRYKVFVDLFNLSTFLIPRSYIPPLSTSMRSHL-CNWGSANSTNIVSNGN 387



 Score = 24.6 bits (51), Expect = 0.85
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 346 NHVIMVQRMIXXXXXXXXXXXXXXXLRSTLRIVTKSFL 233
           NHV+MVQRMI               LRSTL    K F+
Sbjct: 308 NHVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDRYKVFV 345


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,159
Number of Sequences: 336
Number of extensions: 3577
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)