Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0323
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    30   0.40 
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    29   0.92 
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   2.8  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    26   4.9  

>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +1

Query: 112  VSSPFSLTLSPHVRLRLRFMSSSSGGIRARGNRNVDKLNRSRKTL*RSLMLTVDTDSQTS 291
            +S P S  L PH+     F + SS G R+   +  ++   S  T+  SLM  V  +  +S
Sbjct: 896  LSVPLSFRLGPHMHSVKSFETESSFGNRSLSPKQENRRTYSDSTIESSLMPNVVREDSSS 955

Query: 292  PR 297
             R
Sbjct: 956  DR 957


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 278 SVSTVNIKDRYKVFLDLFNLSTFLLPRALIPPLDE 174
           SVS V ++ RY  F  L+ L +   P  +IPP+ E
Sbjct: 235 SVSNVTVQRRYNDFAFLYQLLSNNHPGCIIPPIPE 269


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 31  IKYVLKILSGHIIIFRYKEASRPFCGVVSSPFSLTLSP 144
           ++Y+  +  GH+  FRY ++   FC  ++       SP
Sbjct: 269 VEYLALVYPGHLFAFRYDKSLGKFCSFLNHNLLSLCSP 306


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 655 FKGFLHINVSVWKLDISYKKALK 723
           F+ F   N SVWK+D SY + LK
Sbjct: 286 FEHFDPENYSVWKVDYSYPEDLK 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,117
Number of Sequences: 5004
Number of extensions: 58397
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)