Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0323
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1327 + 32677408-32677460,32677563-32677658,32677737-326778...    31   0.96 
05_05_0045 + 21830291-21830343,21830446-21830541,21830620-218306...    31   1.3  
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301...    31   1.3  
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063...    30   1.7  
12_01_0561 + 4550119-4550265,4550716-4550791,4551601-4551668,455...    28   9.0  

>04_04_1327 +
           32677408-32677460,32677563-32677658,32677737-32677811,
           32678446-32678520,32678615-32678837,32678931-32679174,
           32679740-32680197,32680276-32680470,32680660-32681361
          Length = 706

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -1

Query: 344 PRYNGAKDD-RVATARDRGLVWLSVSTVNIKDRYKVFLDLFNLSTFLLPRALIPPLDEDM 168
           P  +G KDD   + +R    V L+  TV +       +   ++ TF +   ++  L EDM
Sbjct: 502 PHLHGYKDDVNASQSRSYRHVMLNRKTVEVAK-----IANKDVQTFKMAMTVMNKLLEDM 556

Query: 167 KRSLNLTWGDNVRE 126
           K  L+L  GDN RE
Sbjct: 557 KNQLSLDDGDNSRE 570


>05_05_0045 +
           21830291-21830343,21830446-21830541,21830620-21830694,
           21831329-21831403,21831497-21831719,21831813-21832056,
           21832621-21832769,21832913-21832944,21832991-21833078,
           21833157-21833438,21833542-21834243
          Length = 672

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 344 PRYNGAKDDRVAT-ARDRGLVWLSVSTVNIKDRYKVFLDLFNLSTFLLPRALIPPLDEDM 168
           P  +G KDD  A+ +R    V L+  TV +       +   ++ TF +   ++  L EDM
Sbjct: 468 PHLHGYKDDVDASQSRSYRHVMLNRKTVEVAK-----IANKDVQTFKMAMTVMNKLLEDM 522

Query: 167 KRSLNLTWGDNVRE 126
           K  L+L  GDN RE
Sbjct: 523 KNQLSLDDGDNSRE 536


>04_03_0540 +
           16929782-16929834,16929937-16930032,16930111-16930185,
           16930819-16930893,16930987-16931209,16931303-16931546,
           16932111-16932568,16932647-16932928,16933032-16933733
          Length = 735

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 344 PRYNGAKDDRVAT-ARDRGLVWLSVSTVNIKDRYKVFLDLFNLSTFLLPRALIPPLDEDM 168
           P  +G KDD  A+ +R    V L+  TV +       +   ++ TF +   ++  L EDM
Sbjct: 531 PHLHGYKDDVDASQSRSYRHVMLNRKTVEVAK-----IANKDVQTFKMAMTVMNKLLEDM 585

Query: 167 KRSLNLTWGDNVRE 126
           K  L+L  GDN RE
Sbjct: 586 KNQLSLDDGDNSRE 599


>01_06_1350 +
           36505926-36505978,36506081-36506176,36506255-36506329,
           36506964-36507038,36507132-36507348,36507442-36507685,
           36508250-36508707,36508786-36509067,36509171-36509872
          Length = 733

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = -1

Query: 344 PRYNGAKDDRVATARDRGLVWLSVSTVNIKDRYKVFLDLFNLSTFLLPRALIPPLDEDMK 165
           P  +G KDD V  ++ R  + + +    ++       D+    TF +   ++  L EDMK
Sbjct: 529 PHLHGYKDD-VDASQSRSYIHVMLKRKTVEVAKIANKDV---QTFKMAMTVMNKLLEDMK 584

Query: 164 RSLNLTWGDNVRE 126
             L+L  GDN RE
Sbjct: 585 NQLSLDDGDNSRE 597


>12_01_0561 +
           4550119-4550265,4550716-4550791,4551601-4551668,
           4551951-4552039,4552136-4552313,4553096-4553229,
           4553307-4553520,4553601-4553785,4553930-4554025,
           4554105-4554231
          Length = 437

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 660 GFSSHKCLSLEARYIV*KSLKKYMGMR 740
           G+ SH C++  +RY+  K  ++YM +R
Sbjct: 60  GYGSHACVTPTSRYMAPKGSERYMTVR 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,041,314
Number of Sequences: 37544
Number of extensions: 326267
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)