Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0323
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U20861-13|ABD63242.1| 112|Caenorhabditis elegans Hypothetical p... 50 2e-06
U20861-12|AAA62299.1| 403|Caenorhabditis elegans Hypothetical p... 50 2e-06
Z81524-6|CAB04254.2| 308|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81103-8|CAB03212.2| 308|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z75543-11|CAA99876.1| 277|Caenorhabditis elegans Hypothetical p... 30 2.0
AY728064-1|AAU43725.1| 277|Caenorhabditis elegans cadmium-induc... 30 2.0
AY204190-1|AAO39194.1| 382|Caenorhabditis elegans nuclear recep... 29 4.6
AF022978-5|AAG24181.2| 382|Caenorhabditis elegans Nuclear hormo... 29 4.6
Z81103-6|CAK12564.1| 90|Caenorhabditis elegans Hypothetical pr... 28 6.0
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p... 28 6.0
>U20861-13|ABD63242.1| 112|Caenorhabditis elegans Hypothetical
protein C28H8.11c protein.
Length = 112
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = -1
Query: 341 RYNGAKDDRVATARDRGLVWLSVSTVNIKDRYKVFLDLFNLSTFLLPRALIPPLDEDMKR 162
R GAK T G ++L STV+ DRYKVFLDLFNLST+L+PR IP L M +
Sbjct: 42 RMLGAKQ---GTGGSSGYMYLR-STVS--DRYKVFLDLFNLSTWLIPREYIPMLSPRMVK 95
Query: 161 SLN 153
+L+
Sbjct: 96 TLS 98
>U20861-12|AAA62299.1| 403|Caenorhabditis elegans Hypothetical
protein C28H8.11a protein.
Length = 403
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = -1
Query: 341 RYNGAKDDRVATARDRGLVWLSVSTVNIKDRYKVFLDLFNLSTFLLPRALIPPLDEDMKR 162
R GAK T G ++L STV+ DRYKVFLDLFNLST+L+PR IP L M +
Sbjct: 333 RMLGAKQ---GTGGSSGYMYLR-STVS--DRYKVFLDLFNLSTWLIPREYIPMLSPRMVK 386
Query: 161 SLN 153
+L+
Sbjct: 387 TLS 389
>Z81524-6|CAB04254.2| 308|Caenorhabditis elegans Hypothetical
protein F32H5.6a protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 378 ERQI*I*ILFVVHSSLHLFDLLEKILMKKLNSPLSTYFFIFKIVNY 515
+R+I + I V+ +LHL D++ ++ KLNS + Y FIF V++
Sbjct: 214 KRRISMYIQSVLQDTLHLIDMINCTILFKLNSAI-WYQFIFLSVSF 258
>Z81103-8|CAB03212.2| 308|Caenorhabditis elegans Hypothetical
protein F32H5.6a protein.
Length = 308
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +3
Query: 378 ERQI*I*ILFVVHSSLHLFDLLEKILMKKLNSPLSTYFFIFKIVNY 515
+R+I + I V+ +LHL D++ ++ KLNS + Y FIF V++
Sbjct: 214 KRRISMYIQSVLQDTLHLIDMINCTILFKLNSAI-WYQFIFLSVSF 258
>Z75543-11|CAA99876.1| 277|Caenorhabditis elegans Hypothetical
protein K01D12.11 protein.
Length = 277
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 344 PRYNGAKDDRVATARDRGLVWLSVSTVNIKDR-YKVFLDLFNLSTFLLPRALIPPLDEDM 168
P A+ ++ D L ++ + + D Y +F DLFNL +FL+P +IP +
Sbjct: 123 PDEQEAQSVALSRMADNHLFYILIRYKSASDSLYNIFGDLFNLPSFLVP-VVIPVVRAFF 181
Query: 167 KRSL 156
KR +
Sbjct: 182 KRKI 185
>AY728064-1|AAU43725.1| 277|Caenorhabditis elegans
cadmium-inducible lysosomal proteinCDR-4 protein.
Length = 277
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 344 PRYNGAKDDRVATARDRGLVWLSVSTVNIKDR-YKVFLDLFNLSTFLLPRALIPPLDEDM 168
P A+ ++ D L ++ + + D Y +F DLFNL +FL+P +IP +
Sbjct: 123 PDEQEAQSVALSRMADNHLFYILIRYKSASDSLYNIFGDLFNLPSFLVP-VVIPVVRAFF 181
Query: 167 KRSL 156
KR +
Sbjct: 182 KRKI 185
>AY204190-1|AAO39194.1| 382|Caenorhabditis elegans nuclear receptor
NHR-106 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 314 PDHPLHHYNVVVCKIESRLLKRTTNLNINSFCCSFVSSLIRFAGK 448
P H +H + + C+ + +R N N C + S+ F GK
Sbjct: 11 PAHGIH-FGAITCRGCAAFFRRAVNTKTNRKSCKYSSNCTNFTGK 54
>AF022978-5|AAG24181.2| 382|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 106 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 314 PDHPLHHYNVVVCKIESRLLKRTTNLNINSFCCSFVSSLIRFAGK 448
P H +H + + C+ + +R N N C + S+ F GK
Sbjct: 11 PAHGIH-FGAITCRGCAAFFRRAVNTKTNRKSCKYSSNCTNFTGK 54
>Z81103-6|CAK12564.1| 90|Caenorhabditis elegans Hypothetical
protein F32H5.6b protein.
Length = 90
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 408 VVHSSLHLFDLLEKILMKKLNSPLSTYFFIFKIVNY 515
V+ +LHL D++ ++ KLNS + Y FIF V++
Sbjct: 6 VLQDTLHLIDMINCTILFKLNSAI-WYQFIFLSVSF 40
>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
protein C06A5.1 protein.
Length = 1932
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = +2
Query: 338 NVVVCKIESRLLKRTTNLNINSFCCSFVSSLIRFAGKNTDEEIELAALNILFYI 499
+V + +E+RL ++ S+C + L++ DE++ + + +IL Y+
Sbjct: 539 DVPLIPVEARLARQKFECEFISYCEKVIEQLLKSRNLFFDEQVFIRSFSILLYL 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,675
Number of Sequences: 27780
Number of extensions: 321250
Number of successful extensions: 852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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