Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0323
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.2  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 74  KIIMCPDNIFKTYFITF 24
           K +   DNI + YFITF
Sbjct: 109 KKVFMKDNILRQYFITF 125


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 74  KIIMCPDNIFKTYFITF 24
           K +   DNI + YFITF
Sbjct: 92  KKVFMKDNILRQYFITF 108


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 290 LVWLSVSTVNIKDRYKVFLDLFNLSTFLLPRALIPPL 180
           +V++ +ST +++    +F+    +S FL+   + PP+
Sbjct: 73  VVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPM 109


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 268 RSTLRIVTKSFLICSICPRSCCLVP*YRH 182
           R  L I  +SFL+ SI       V  Y+H
Sbjct: 2   RCMLEIAARSFLLLSIASTYVVSVAGYKH 30


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 290 LVWLSVSTVNIKDRYKVFLDLFNLSTFLLPRALIPPL 180
           +V++ +ST +++    +F+    +S FL+   + PP+
Sbjct: 39  VVYIFLSTKSLRTPSNLFVINLAISDFLMMFCMSPPM 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,831
Number of Sequences: 438
Number of extensions: 4173
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)