Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0322
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 100 3e-22
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 31 0.19
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 29 1.0
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 1.0
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 28 1.3
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 2.3
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 27 3.1
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 27 4.0
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 26 7.1
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 26 7.1
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 9.4
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 9.4
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 9.4
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 100 bits (239), Expect = 3e-22
Identities = 44/85 (51%), Positives = 60/85 (70%)
Frame = +1
Query: 1 EWHKRVKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLFTLWVGFAKFYENNDQIEDARLIF 180
EW +RVK E +++ YT+A++ V+PKLA G L L+ FA+FYEN D +E +R+IF
Sbjct: 354 EWLRRVKFLEDDSEKVVQVYTDAIKNVNPKLAHGSLGKLFSEFARFYENFDDLEQSRIIF 413
Query: 181 EKATQVAYVKVDDLASVWCEWAEME 255
EKAT V Y V++LA VW +WAEME
Sbjct: 414 EKATHVPYKTVNELAQVWIDWAEME 438
Score = 99.1 bits (236), Expect = 6e-22
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 2/178 (1%)
Frame = +3
Query: 255 IRHENYEQALKLMQRATVLPSRK-VAYHDDSETVQMRLYKSLKVWSMYADLEESFGTFKS 431
+RH+N++ A KL+ A P + +++ D+S + Q+RL+KS K+W Y DLEES GT ++
Sbjct: 439 LRHQNFDAARKLIGDAVHAPRKSHISFFDESLSPQVRLHKSSKIWMYYLDLEESVGTIET 498
Query: 432 CKAVYDHIIDLKIATPQIIINYGLFLKSIITLKKLLEHMKR-VLPYSSGLMCMIFGIHI* 608
+ +YD + +LKIATPQ+++NY L+ + + +R V +S + ++ +++
Sbjct: 499 TRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGVALFSYPVAFELWNLYL- 557
Query: 609 QNF*KDMVVPKLERARDLFEPCLGALSHGICKVYFLNYMPNWKKSWVSLTCLSVYERA 782
F K +ER RDLFE L K +L Y +K + +S+ E+A
Sbjct: 558 TKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEEKFGKAKRSISILEKA 615
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 372 SLKVWSMYADLEESFGTFKSCKAVYDHIIDLKIATPQIIINYGLFLKSI 518
S ++ +YAD EE FG K ++ + D K+ T + Y + L +
Sbjct: 588 SKSIYLLYADFEEKFGKAKRSISILEKAAD-KVKTADRLAIYNVLLVKV 635
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 485 YYQLWIIFEEHNYFEEAFRAYEKGIALFKWPNVYD--IWNTYLTKFLKRY 628
Y++ W++ +E F+ AY+ GI F N Y + + KF+++Y
Sbjct: 34 YWEDWVLEDEEEVFKIMKAAYDAGIRTFDTANCYSAGVSEELVGKFIRKY 83
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 473 YSTNYYQLWIIFEEHNYFEEAFRAYEKGIA 562
Y+ + Y+L ++ E+ EEA +EKG++
Sbjct: 314 YTRSLYRLGVLLEDQGNLEEAVEYFEKGVS 343
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 372 SLKVWSMYADLEESFGTFKSCKAVYDHIIDLKIATPQIIINYGLF 506
S+ VW+ YA LE G F + ++ I + + + I N ++
Sbjct: 627 SVSVWNTYAQLEHLSGAFTMAETIFKTIFQIHASQLRYIDNLNVY 671
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 306 VLPSRKVAYHDDSETVQMRLYKSLKVWSMYADLE 407
VLP RK+A H + R K+L VW++ ADLE
Sbjct: 199 VLPGRKMAGHMGHRS---RTVKNLLVWAVDADLE 229
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 112 TLWVGFAKFYENNDQIEDARLIFEKATQ 195
++W+ +A F NND+ E A + E++ Q
Sbjct: 1547 SVWIQYATFLLNNDKAEKAHGLLERSLQ 1574
>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 339 DSETVQMRLYKSLKVWSMYADLEESFGTFKSCKAVYDHI 455
D + + LYKS K + L E F+SC ++D I
Sbjct: 27 DVTMINISLYKSYKSYPTNKVLSELAALFESCNLIFDLI 65
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 366 YKSLKVWSMYADLEESFGTFKSCKAVYDHIIDLKIATPQIIINYG 500
Y L+ W+ AD+ S F+S Y+ ++ L+ P++ G
Sbjct: 136 YNDLEAWAELADIYVSVEAFESAIFCYEEMVLLQPFEPRLFARLG 180
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = +1
Query: 7 HKRVKLYEGKPHEIIDTYTEAVQT--VDPKLAVGKLFTLWVG----FAKFYENNDQIEDA 168
HKRV + KP+ ++D T+A + LA+ LFTL + + FY + D
Sbjct: 255 HKRVIPFLQKPNLLMDFLTDAYNSHHAVSLLALNGLFTLMISHNLDYPLFYPKLYALLDR 314
Query: 169 RLIFEKATQVAYVKVDDL 222
L++ K T+ + ++ DL
Sbjct: 315 NLLYLK-TRSRFFRLLDL 331
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -2
Query: 487 IICGVAIFKSII*SYTALQDLNVPKLSSKSAYMDQTFSDLYNLICTVS 344
++ GVA+ + T + L++ + +KS++ + D YN CT++
Sbjct: 964 LVYGVALCTQTV---TTAKALHLARFCTKSSHYRKKLWDFYNFSCTIT 1008
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 456 IDLKIATPQ--IIINYGLFLKSIITLKKLLEHMKRVL 560
IDL+ +P ++ NY LF+ ++TLK L +K ++
Sbjct: 374 IDLEQISPSDCLLDNYSLFVDLLVTLKVSLLRIKSII 410
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 278 LLIIFMSDSISAHSHQTEAKSSTLTYATCVAFSKINL 168
LL++ +S + S E S TLTY TCVA ++ L
Sbjct: 275 LLLVLISKRLYRSS---EVASHTLTYLTCVANKQLIL 308
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 357 MRLY-KSLKVWSMYADLEESFGTFKSCKAVYDHIID 461
+R+Y KS K+W +LE+ +GT +S ++ + ++
Sbjct: 537 LRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVE 572
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +3
Query: 378 KVWSMYADLEESFGTFKSCKAVYD 449
K+W Y +EE G C+ V++
Sbjct: 139 KLWYKYVYMEEMLGNITGCRQVFE 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,218
Number of Sequences: 5004
Number of extensions: 78055
Number of successful extensions: 207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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