Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0322
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 117 9e-27
06_01_0917 - 7077934-7080339 96 2e-20
01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246 81 7e-16
09_02_0465 - 9594866-9595672,9596036-9597496 32 0.45
05_03_0328 - 12468142-12468262,12468443-12468641,12468758-124689... 29 3.2
12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264... 29 4.2
01_06_1478 - 37648781-37649113,37649200-37649455,37649954-376500... 29 4.2
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 117 bits (282), Expect = 9e-27
Identities = 52/85 (61%), Positives = 63/85 (74%)
Frame = +1
Query: 1 EWHKRVKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLFTLWVGFAKFYENNDQIEDARLIF 180
EWH+RVKL+E P + TY EAV+TVDP A GK TLWV FAK YE +++++ A IF
Sbjct: 398 EWHRRVKLFEKDPTRQVATYVEAVKTVDPMKAAGKPHTLWVAFAKMYEKHNRLDSAEEIF 457
Query: 181 EKATQVAYVKVDDLASVWCEWAEME 255
+KATQV Y VD LAS+WCEWAEME
Sbjct: 458 KKATQVNYKAVDHLASIWCEWAEME 482
Score = 107 bits (257), Expect = 1e-23
Identities = 62/179 (34%), Positives = 101/179 (56%), Gaps = 3/179 (1%)
Frame = +3
Query: 255 IRHENYEQALKLMQRATVLPSRKV---AYHDDSETVQMRLYKSLKVWSMYADLEESFGTF 425
+RH N+++A++LM++AT PS +V A + E VQ++++KSLK+WS Y DLEES GT
Sbjct: 483 LRHSNFDKAIELMRQATAEPSVEVKRRAAAEGDEPVQLKVHKSLKLWSFYVDLEESLGTL 542
Query: 426 KSCKAVYDHIIDLKIATPQIIINYGLFLKSIITLKKLLEHMKRVLPYSSGLMCMIFGIHI 605
+S +AVY+ I+DL+IATPQI++NY L+ + + +R + +
Sbjct: 543 ESTRAVYERILDLRIATPQIVLNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTY 602
Query: 606 *QNF*KDMVVPKLERARDLFEPCLGALSHGICKVYFLNYMPNWKKSWVSLTCLSVYERA 782
F + KLERAR+LF+ + KV +L Y + ++ ++VY+ A
Sbjct: 603 LTKFVRRYQRSKLERARELFDEAVKQAPPQEKKVLYLQYAKLEEDYGLAKRAMNVYDEA 661
>06_01_0917 - 7077934-7080339
Length = 801
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +1
Query: 4 WHKRVKLYEGKPHEIIDTYTEAVQTVDPKLAVGKL--FTLWVGFAKFYENNDQIEDARLI 177
WH R KL++ P + TY EAV+TVDP A GK TLW+ FAK YE+ ++ AR +
Sbjct: 359 WHARAKLFDEDPARKVATYVEAVKTVDPAKATGKPPPHTLWLAFAKMYEDRGLLDSAREV 418
Query: 178 FEKATQVAYVKVDDLASVWCEWAEME 255
+ATQ ++ D LA+VWCEWAEME
Sbjct: 419 LRRATQASFKAADHLAAVWCEWAEME 444
Score = 63.3 bits (147), Expect = 2e-10
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Frame = +3
Query: 255 IRHENYEQALKLMQRATVLPS----RKVAYHDDSETVQMRLYKSLKVWSMYADLEESFGT 422
+R N +A++L+++AT PS R+VA VQ +L++SLK+W YADL E+ G+
Sbjct: 445 LRQHNANRAIELIRQATSEPSLEVRRQVAAGVGETVVQTKLHRSLKLWCFYADLMETHGS 504
Query: 423 FKSCKAVYDHIIDLKIATPQIIINYGLFLK 512
+S AVYD + +L I TP +++ + L+
Sbjct: 505 PESTCAVYDRMHELGIITPLLVLRHASLLQ 534
Score = 61.3 bits (142), Expect = 9e-10
Identities = 24/46 (52%), Positives = 34/46 (73%)
Frame = +2
Query: 503 IFEEHNYFEEAFRAYEKGIALFKWPNVYDIWNTYLTKFLKRYGGSK 640
+ +EH FE+AFR YE+G+ FK+P+ IW YLTKF++R+G SK
Sbjct: 532 LLQEHKRFEDAFRVYERGVRTFKYPHDEAIWAAYLTKFVERHGASK 577
>01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246
Length = 749
Score = 81.4 bits (192), Expect = 7e-16
Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 6/92 (6%)
Frame = +3
Query: 255 IRHENYEQALKLMQRATVLPSRKV------AYHDDSETVQMRLYKSLKVWSMYADLEESF 416
+RH+ +++A+ LM++AT PS +V A D E Q++L+KS K+WS Y DLEES
Sbjct: 422 LRHKRFDKAIALMRQATAEPSAEVKLRAAAAAAGDDEPAQLKLHKSAKLWSFYVDLEESL 481
Query: 417 GTFKSCKAVYDHIIDLKIATPQIIINYGLFLK 512
G S +A Y+ + + ATPQ++INY FL+
Sbjct: 482 GALASTRAAYEGAMAARAATPQMVINYASFLE 513
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 509 EEHNYFEEAFRAYEKGIALFKWPNVYDIWNTYLTKFLKRYGGSK 640
EE YFE++F AYE G LF P+ IW+TYL +F+ R+GGSK
Sbjct: 513 EERGYFEDSFAAYETGANLFGHPHSKPIWDTYLERFVARHGGSK 556
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = +1
Query: 133 KFYENNDQIEDARLIFEKATQVAYVKVDDLASVWCEWAEMESDMKIMSK 279
K YE + ++ A +F KATQ ++ DDLA+VWCEWAEM+ K K
Sbjct: 381 KMYEAHGNLDSADEVFAKATQASHRSADDLATVWCEWAEMQLRHKRFDK 429
>09_02_0465 - 9594866-9595672,9596036-9597496
Length = 755
Score = 32.3 bits (70), Expect = 0.45
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +1
Query: 91 LAVGKLFTLWVGFAKFYENNDQIEDARLIFEKATQVAYVKVDDLASVWCEWAEMESDMKI 270
LA K W G Y N ++E+AR +F T+ + + L S + +W +M ++
Sbjct: 156 LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEAREL 215
Query: 271 MSK 279
+
Sbjct: 216 FDR 218
>05_03_0328 -
12468142-12468262,12468443-12468641,12468758-12468974,
12469896-12469994,12470843-12470899,12470943-12472577
Length = 775
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 118 WVGFAKFYENNDQIEDARLIFEKATQVAYVKVDDLASVWCEWAEME 255
WV +AK+ E AR ++E+A VA+ ++W ++AE E
Sbjct: 110 WVKYAKWEEQQRDFARARSVYERALDVAHRD----HTLWLKYAEFE 151
>12_01_0343 +
2640822-2641106,2641488-2641556,2641708-2641887,
2642015-2642081,2643237-2644015
Length = 459
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +1
Query: 28 EGKPHEIIDTYTEAVQTVDPKLAVGKLFTLWVGFAKFYENNDQIEDARLIFEK--ATQ 195
E + E+ D+ + VQ VDP LA K + VG ++ +N+Q ++ +++ ++ ATQ
Sbjct: 70 EFEREEMDDSDEDQVQGVDPLLAQNKEVSTSVGCGEYEGSNNQSQNQQMVSKQGAATQ 127
>01_06_1478 -
37648781-37649113,37649200-37649455,37649954-37650066,
37650312-37650689,37650822-37650999,37651429-37651565,
37651993-37652155,37652531-37652688,37652819-37652923,
37653106-37653253,37653816-37654132
Length = 761
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 518 NYFEEAFRAYEKGIALFKWPNVYDIWNTYLTKFLKRYGGSKT*KS 652
+Y A EKG++L DIW TYL + LK + G +T KS
Sbjct: 216 HYLFRALVGSEKGLSL-------DIWTTYLGELLKVHHGRQTHKS 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,695,045
Number of Sequences: 37544
Number of extensions: 422500
Number of successful extensions: 1034
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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