Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0322
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43326| Best HMM Match : TPR_2 (HMM E-Value=0.045)                  139   2e-33
SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         29   5.7  
SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.9  

>SB_43326| Best HMM Match : TPR_2 (HMM E-Value=0.045)
          Length = 261

 Score =  139 bits (337), Expect = 2e-33
 Identities = 63/85 (74%), Positives = 74/85 (87%)
 Frame = +1

Query: 1   EWHKRVKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLFTLWVGFAKFYENNDQIEDARLIF 180
           EWHKRVKLY+GKP EII+T+TEAVQTVDPKLA GK  TLWV FA+FYE ++Q+ +AR+IF
Sbjct: 52  EWHKRVKLYDGKPKEIINTFTEAVQTVDPKLATGKPHTLWVEFARFYEKHNQLAEARVIF 111

Query: 181 EKATQVAYVKVDDLASVWCEWAEME 255
           +KAT+V Y  VDDLASVWCE AEME
Sbjct: 112 DKATKVNYRHVDDLASVWCEVAEME 136



 Score =  130 bits (313), Expect = 2e-30
 Identities = 58/86 (67%), Positives = 74/86 (86%)
 Frame = +3

Query: 255 IRHENYEQALKLMQRATVLPSRKVAYHDDSETVQMRLYKSLKVWSMYADLEESFGTFKSC 434
           IRHENY +AL+L+++AT +PS K  Y+D+SETVQ R++KSLK+WSMYADLEES GTF+S 
Sbjct: 137 IRHENYSKALELIRKATAVPSTKTNYYDESETVQKRVHKSLKLWSMYADLEESLGTFQST 196

Query: 435 KAVYDHIIDLKIATPQIIINYGLFLK 512
           KAVY  I+DL+IA PQIIINY +FL+
Sbjct: 197 KAVYGRILDLRIANPQIIINYAMFLE 222



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 30/43 (69%), Positives = 39/43 (90%)
 Frame = +2

Query: 500 IIFEEHNYFEEAFRAYEKGIALFKWPNVYDIWNTYLTKFLKRY 628
           +  EEH YFEE+F+ YE+G+A+FKWPNV+DIWNTYL+KF+KRY
Sbjct: 219 MFLEEHRYFEESFKVYERGVAMFKWPNVFDIWNTYLSKFIKRY 261


>SB_27487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 729 LAYN*ENRLCKFHGTRLQDMAQIN-LWLFQVLEPPY 625
           + +N  NRLC+  G RL  +AQ++  W F + E  Y
Sbjct: 312 IKFNEANRLCQVFGARLATIAQVDQAWKFGLFECRY 347


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 97   VGKLFTLWVGFAKFYENNDQIEDARL 174
            VG  +  W G+AK + N DQ+   RL
Sbjct: 1823 VGVTYNYWSGWAKLFINGDQVAKTRL 1848


>SB_8161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 160 EDARLIFEKATQVAYVKVDDLASVWCEWAEMESDMKIM 273
           E ARL+   AT   Y +   L S+   WA   SD+K M
Sbjct: 383 ESARLVSHLATHATYGRRFMLTSLTSGWAARASDIKAM 420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,385,590
Number of Sequences: 59808
Number of extensions: 504698
Number of successful extensions: 964
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)