Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0322
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28740.1 68418.m03530 transcription-coupled DNA repair protei...   120   1e-27
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c...    31   1.2  
At5g45990.1 68418.m05656 crooked neck protein, putative / cell c...    29   2.7  
At5g02370.1 68418.m00160 kinesin motor protein-related kinesin, ...    28   8.1  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    28   8.1  

>At5g28740.1 68418.m03530 transcription-coupled DNA repair
           protein-related similar to XAB2 (XPA-binding protein 2)
           [Homo sapiens] GI:10566459
          Length = 917

 Score =  120 bits (289), Expect = 1e-27
 Identities = 54/85 (63%), Positives = 65/85 (76%)
 Frame = +1

Query: 1   EWHKRVKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLFTLWVGFAKFYENNDQIEDARLIF 180
           +WH+RVK++EG   + I TYTEAV+TVDP  AVGK  TLWV FAK YEN+  + + R+IF
Sbjct: 387 QWHRRVKIFEGNAAKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYENHKDLVNTRVIF 446

Query: 181 EKATQVAYVKVDDLASVWCEWAEME 255
           +KA QV Y  VD LASVWCEWAEME
Sbjct: 447 DKAVQVNYKTVDHLASVWCEWAEME 471



 Score =  115 bits (277), Expect = 3e-26
 Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 4/181 (2%)
 Frame = +3

Query: 255  IRHENYEQALKLMQRATVLPS----RKVAYHDDSETVQMRLYKSLKVWSMYADLEESFGT 422
            +RH+N++ AL+LM+RAT +P+    R+VA  D +E VQM+L++SL++WS Y DLEES GT
Sbjct: 472  LRHKNFKGALELMRRATAVPTVEVRRRVAA-DGNEPVQMKLHRSLRLWSFYVDLEESLGT 530

Query: 423  FKSCKAVYDHIIDLKIATPQIIINYGLFLKSIITLKKLLEHMKRVLPYSSGLMCMIFGIH 602
             +S +AVY+ I+DL+IATPQII+NY   L+     +   +  +R +            + 
Sbjct: 531  LESTRAVYEKILDLRIATPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVT 590

Query: 603  I*QNF*KDMVVPKLERARDLFEPCLGALSHGICKVYFLNYMPNWKKSWVSLTCLSVYERA 782
                F K     KLERAR+LFE  +        +  +L Y    +   ++   + VYE A
Sbjct: 591  YLTKFVKRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKVYEEA 650

Query: 783  T 785
            T
Sbjct: 651  T 651


>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 705

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 3/143 (2%)
 Frame = +3

Query: 366 YKSLKVWSMYADLEESFGTFKSCKAVYDHIIDLKIATPQI---IINYGLFLKSIITLKKL 536
           Y++  +W  YA+ E       S + V+D  + L     Q+    I+    L +I   +++
Sbjct: 123 YRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQI 182

Query: 537 LEHMKRVLPYSSGLMCMIFGIHI*QNF*KDMVVPKLERARDLFEPCLGALSHGICKVYFL 716
            E      P   G +  I        F  ++   ++ERAR ++E  +  L H     Y +
Sbjct: 183 FERWMDWSPDQQGWLSFI-------KF--ELRYNEIERARTIYERFV--LCHPKVSAY-I 230

Query: 717 NYMPNWKKSWVSLTCLSVYERAT 785
            Y     K      C SVYERAT
Sbjct: 231 RYAKFEMKGGEVARCRSVYERAT 253


>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 673

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 381 VWSMYADLEESFGTFKSCKAVYDHIID 461
           +W  Y D E S G F+  +A+Y+ ++D
Sbjct: 515 LWKTYIDFEISEGEFEKTRALYERLLD 541



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 115 LWVGFAKFYENNDQIEDARLIFEKATQVAYVKVDDLASVWCEWAEMESDMKIMSKP*N 288
           +WV +AK+ E+      AR ++E+A +  Y       ++W ++AE E   K ++   N
Sbjct: 80  VWVKYAKWEESQMDYARARSVWERALEGEYRN----HTLWVKYAEFEMKNKFVNNARN 133


>At5g02370.1 68418.m00160 kinesin motor protein-related kinesin,
           Xenopus laevis, EMBL:XLA249840
          Length = 628

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 732 NLAYN*ENRLCKFHGTRLQDMAQINLWLFQVLEPPYLFKN 613
           +LA N +NR     G RLQ+ A+IN  LF +    Y   N
Sbjct: 248 DLAGNEDNRRTGNEGIRLQESAKINQSLFALSNVVYALNN 287


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 414  FGTFKSCKAVYDHIIDLKIATPQIIINYGLFLKSIITLKKLLEHMKRVLPYSS 572
            F      K ++ H+ D+   TP     YG  L+ ++ +K+    M++   YSS
Sbjct: 924  FPLLSMAKTLFTHVHDILSNTPSFQSEYGTILRHLLEIKEYRFQMRK-RTYSS 975


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,648,757
Number of Sequences: 28952
Number of extensions: 378815
Number of successful extensions: 942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)