Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0318
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 30 0.24
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 29 0.55
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 29 0.73
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 28 1.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.7
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 27 3.0
SPCC1450.05c |rox3|med19|RNA polymerase II holoenzyme mediator c... 26 5.2
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 5.2
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 5.2
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 9.0
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 9.0
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos... 25 9.0
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 25 9.0
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 30.3 bits (65), Expect = 0.24
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +3
Query: 237 EEMYPNGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKE-----EVTGVGY-SNEQFA 398
E + +G+ADGT + W I ++ F H+ + N+ V G+ + S+ ++
Sbjct: 202 EFVLASGSADGTCRLWDIRKVSSSFACMDLHNKYLPSNQTNISHYGTVNGLAWTSDARYL 261
Query: 399 ITVGSFGTVVKWDLKSNVVKNYQHLLKSFKPV 494
+ G+ + W+++S ++ L+ F P+
Sbjct: 262 ASCGTDDRIRVWNMESG-----RNTLREFGPI 288
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 29.1 bits (62), Expect = 0.55
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Frame = +3
Query: 252 NGAADGTVKQW--VITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSFGTV 425
+G+ DGTVK W + ++ + + + + + N+ + VG+ N ++G
Sbjct: 245 SGSEDGTVKIWHTLSYSLIKSYNFSLDRAWCIAQNKDNGLVTVGFDNGLITFSLGRDEPS 304
Query: 426 VKWDLKSNVV-KNYQHLLKS 482
V D VV NY ++ +
Sbjct: 305 VTMDSSGKVVWSNYNEVMSA 324
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 28.7 bits (61), Expect = 0.73
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 288 ITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAI 401
ITN A+ I S H+ H +E+T SN+Q ++
Sbjct: 443 ITNSAKNEHIRSQRQHKTHAAPSKELTKESLSNDQLSV 480
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 333 HEVHHNEKEEVTGVG-YSNEQFAITVGSFGTVVKWDL 440
H + + + +TG+ + +E+ A+TVG G + WDL
Sbjct: 113 HTLKSSSHKGITGIAVHPSEKLALTVGGDGKLRLWDL 149
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = -1
Query: 488 LETFQQVLVIFNYI*FQIPFNNSSKRTNCYCKLFIAIPNTSYFFFFIMMHFMAVC*IYLE 309
L F+ +L+ F ++ F + F+ S ++FI ++ F+ F+ VC ++L
Sbjct: 110 LSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVC-VFLS 168
Query: 308 FLGYIS 291
FL +S
Sbjct: 169 FLFSLS 174
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 374 NTSYFFFFIMMHFMAVC*IYLEFLGYI 294
NTS +F + F+++C +++ FL +I
Sbjct: 80 NTSRSWFRAFLSFLSICFLFISFLNFI 106
>SPCC1450.05c |rox3|med19|RNA polymerase II holoenzyme mediator
complex subunit Med19 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 264 DGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTG 371
D T+KQW+ I +E I+ H V E + G
Sbjct: 71 DNTIKQWLTNPIREEVPIDIEFLHHVFSVEPGIIPG 106
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 500 VLFSHLLLHVAVGTKQGVIFVLDLNGQGKTIYKVRGPDDEV 622
VL++ +AVGT GVI++ D+ K++ ++G + V
Sbjct: 172 VLWTGKGTQLAVGTDSGVIYIWDIEST-KSVRSLKGHSERV 211
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 429 KWDLKSNVVKNYQHLLKSFKPV 494
K ++ SN+ KN+ H LKS P+
Sbjct: 88 KKNVTSNIFKNFLHYLKSLFPI 109
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 255 GAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYS 383
GA +V T ++F++ + +VH ++EE+T G+S
Sbjct: 93 GAEKYSVTMEPCTYTDEKFEVFKKYQMQVHLEKEEEITKKGFS 135
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 442 FRSHLTTVPKEPTVIANCSLLYPTP 368
+R +L + P E NC + +PTP
Sbjct: 171 YRVYLFSTPSETIGFGNCLMEFPTP 195
>SPCC645.11c |mug117||meiotically upregulated gene
Mug117|Schizosaccharomyces pombe|chr 3|||Manual
Length = 186
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 431 FNNSSKRTNCYCKLFIAIPN 372
FNN ++ T CY KL P+
Sbjct: 147 FNNDNENTRCYVKLNYCYPD 166
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 282 WVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQ 392
W ++I+ FK + S+ V + KE+ GVG++ Q
Sbjct: 395 WNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQ 431
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,620
Number of Sequences: 5004
Number of extensions: 59287
Number of successful extensions: 194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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