Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0318
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0316 - 16688911-16689044,16689141-16689211,16689303-166893... 33 0.19
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 33 0.25
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799... 32 0.33
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 30 1.3
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 5.3
04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976... 28 5.3
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 28 5.3
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 28 7.0
03_06_0179 - 32171712-32171780,32171861-32171920,32172096-321721... 28 7.0
12_02_1285 - 27550548-27550709,27551473-27551516,27551588-275516... 27 9.3
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160... 27 9.3
07_03_1352 - 25961782-25962318,25963607-25963810 27 9.3
>10_08_0316 -
16688911-16689044,16689141-16689211,16689303-16689354,
16689589-16689685,16689764-16689841,16689938-16690054,
16690172-16690276,16691026-16691100,16691297-16691356,
16691454-16691549,16691838-16691954,16692142-16692260,
16692349-16692490,16694204-16694290,16694852-16694914,
16695081-16695161
Length = 497
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +3
Query: 234 REEMYPNGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGS 413
R+E++ G+AD TVK W ++E N H+ + H E E VT ++ +++ +T
Sbjct: 244 RDELFVTGSADKTVKIW---QGSEEGNYNCIHTLKDHTAEVEAVT--VHATQKYFVTASK 298
Query: 414 FGTVVKWDLKS 446
T +D+ S
Sbjct: 299 DNTWCFYDIPS 309
>02_02_0473 -
10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 32.7 bits (71), Expect = 0.25
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 234 REEMYPNGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGS 413
REE A +G + ++ + +E N + +E+ +V ++NE F V S
Sbjct: 51 REEQAMGMADEGEIVGIIVDEMEREDSDNEQAEDDASSDEEGDVMATDWANEDFFGLVIS 110
Query: 414 FGTVVKWDLKSN 449
G V W+ K N
Sbjct: 111 DGDHVPWEYKEN 122
>01_06_1440 +
37378121-37378958,37379344-37379494,37379567-37379936,
37380021-37380431,37380522-37380820,37380897-37381155,
37381248-37381497,37381744-37381875,37381936-37382208,
37383023-37383267
Length = 1075
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +3
Query: 234 REEMYPNGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGS 413
REE A +G ++ + +E N + +E+ +V ++NE F+ V S
Sbjct: 145 REEQAMGMADEGERVGTIVDEMEREDSDNEEVDDDASSDEEGDVMATDWANEDFSGLVIS 204
Query: 414 FGTVVKWDLKSNVV 455
G V W+ K N V
Sbjct: 205 EGDHVPWEYKENEV 218
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 237 EEMYPNGAADGTVKQWVITNIAQEFKINSTHSHEV 341
EE + +G+ DG + W++ + + +IN+ H + V
Sbjct: 365 EEYFVSGSYDGAIFHWLVGHETPQIEINNAHDNSV 399
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 315 INSTHSHEVHHNEKEEVTGVGYS-NEQFAITVGSFGTVVKWDL 440
I++T S +V K VTG+ + + ++ +FGTV+ WDL
Sbjct: 145 IDNTIS-KVLKGHKGSVTGLSFDPRNDYLASIDTFGTVIFWDL 186
>04_04_0808 -
28196563-28196735,28197369-28197440,28197540-28197666,
28198362-28198430,28198517-28198583,28198751-28198872,
28199302-28199412,28199596-28199661,28200156-28200213,
28200307-28200343,28200420-28200513,28200967-28201032,
28201139-28201203,28201352-28201496,28201925-28202074,
28202266-28202335,28202752-28202828,28202919-28202987,
28203798-28203881,28204018-28204061,28204172-28204273,
28204420-28204618,28204672-28204727,28204886-28204958,
28205685-28205771,28205863-28205976,28206985-28207092,
28207183-28207278,28207722-28207787,28208130-28208222,
28208429-28208512,28208961-28209078,28209191-28209267,
28209459-28209641,28210542-28210636,28210903-28211053,
28212218-28212325,28212513-28212612,28212788-28212840,
28214022-28214102
Length = 1269
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 460 FLTTFDFRSHLTTVPKEPTVIANCSLLYPT 371
+++TF FR H T V K P ++ SLL PT
Sbjct: 277 YMSTF-FRKHGTFVAKHPLLVLFVSLLVPT 305
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 97 GKSLCIVEPLKNYNSVIDSKQPYCVHFWNRAHNDKIVSV 213
G S + + NY I + P C WN A+ D+IV V
Sbjct: 423 GPSRGLPDESSNYLLHISNSMPLCAVRWNPANQDEIVCV 461
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 483 FKPVCMSCSHICCYM 527
F PV +SC HI CY+
Sbjct: 207 FDPVALSCGHIYCYL 221
>03_06_0179 -
32171712-32171780,32171861-32171920,32172096-32172166,
32172246-32172273,32172356-32172502,32172626-32172904,
32172949-32173011,32173137-32173247,32173605-32173658,
32173761-32173949,32174275-32174670
Length = 488
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 552 TPCLVPTATCSSRCENRTYILA*NFSTGVG 463
TP + PTAT S C + +L S GVG
Sbjct: 16 TPAMTPTATLPSSCASPARLLRWRRSAGVG 45
>12_02_1285 -
27550548-27550709,27551473-27551516,27551588-27551651,
27551733-27552463,27552754-27552798,27553663-27554167
Length = 516
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 382 LYPTPVTSSFSL*CTSWLCVEFILNSWAILVITHCLTVPS 263
++P VT S S+ C + L F+L+ ILV+T C+TV S
Sbjct: 220 IFPFTVTPSCSISCAN-LKSAFLLDI-IILVVTTCITVAS 257
>11_08_0011 +
27612206-27615110,27615211-27615538,27615989-27616059,
27616962-27617118,27617676-27617709
Length = 1164
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 304 WAILVITHCLTVPSAAPLGYISSLAILVIGQH 209
W + ++ + LT P A LG +SSLA LV+ ++
Sbjct: 372 WELQLLGNQLTGPIPASLGNLSSLARLVLNEN 403
>07_03_1352 - 25961782-25962318,25963607-25963810
Length = 246
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 282 WVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSFGTVVKWDL 440
W+ NI Q N+T H+VHH + + + YS F+I GT + ++L
Sbjct: 181 WLPYNIFQSLFQNNTAYHDVHH--QLQGSKYNYSQPFFSIWDRILGTHMPYNL 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,525
Number of Sequences: 37544
Number of extensions: 346426
Number of successful extensions: 854
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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