Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0318
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51617| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_43536| Best HMM Match : DUF1410 (HMM E-Value=3.5)                   28   5.4  
SB_39407| Best HMM Match : TIG (HMM E-Value=0)                         28   5.4  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_51617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +1

Query: 19  LFPSPNWFQVSGLAISKDGWLVYSGPGKSLCI 114
           L PSPNWF +S LAI+  G  +++ P   LCI
Sbjct: 128 LQPSPNWFFLS-LAIADFGVGLFTTPFHMLCI 158


>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +3

Query: 234 REEMYPNGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGS 413
           R     +G AD TVK W IT       +   + H+        VT + +S++ F IT   
Sbjct: 528 RNNTLVSGNADSTVKIWDITTGQCLQTLAGPNKHQ------SAVTCLQFSSK-FVITSSD 580

Query: 414 FGTVVKWDLKS 446
            GTV  WDL++
Sbjct: 581 DGTVKIWDLQT 591


>SB_43536| Best HMM Match : DUF1410 (HMM E-Value=3.5)
          Length = 344

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -2

Query: 604 SNFVNSFSLTIQIQDKYNPLLSTNSNM 524
           +NF +SFS    I+D++N L++T+ +M
Sbjct: 59  ANFYSSFSCDYYIEDQFNELVNTSLSM 85


>SB_39407| Best HMM Match : TIG (HMM E-Value=0)
          Length = 1710

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 318  NSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSFGTVVKWDLKS 446
            N T +H V ++ K    G+GY+  +  +TV + G  V+W   S
Sbjct: 933  NGTVTHHVDNSGKHPEFGIGYAWSKHTLTVHA-GDTVQWTWSS 974


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 1    EMDESVLFPSPNWFQVSGLAISKDGWL-VYSGPGKSLCIVEPLKNYNSV 144
            E+DE  ++  PN F      I +  +L V      S  + E L+NYN V
Sbjct: 2913 ELDEEAMYAKPNMFSHFSSGIGEPKYLAVPDWEVLSKLLTEALENYNEV 2961


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,959,830
Number of Sequences: 59808
Number of extensions: 411896
Number of successful extensions: 1186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)