Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0318
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    31   0.83 
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea...    30   1.5  
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea...    29   3.4  
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ...    29   3.4  
At3g54910.1 68416.m06085 expressed protein various pedicted prot...    28   4.4  
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At1g67500.1 68414.m07688 DNA polymerase family B protein similar...    27   7.8  
At1g15620.1 68414.m01877 expressed protein ; expression supporte...    27   7.8  

>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 222 TRMAREEMYPNGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEV 365
           + M REEM   G      K W+I     E KI+S H+ +  H +++++
Sbjct: 745 SEMIREEMRERGYRKHPAKSWII----HENKIHSFHARDTSHPQEKDI 788


>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           related to En/Spm transposon family of maize
          Length = 465

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +3

Query: 252 NGAADGTVKQWVITNIAQEFKINSTHSHEVHHNEKEEVTGVGYSNEQFAITVGSF-GTVV 428
           +G+ADGTVK W      Q+ K       +    ++  VT +  S    A+  GS  G V 
Sbjct: 264 SGSADGTVKAW---KRDQQGKYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGSSDGLVN 320

Query: 429 KWDLKSNVVKNYQHLLKSFK 488
            W+ +  +  NY  +LK  K
Sbjct: 321 FWEREKQL--NYGGILKGHK 338


>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
           family protein Similar to En/Spm-like transposon protein
           (gi:2739374)[Arabidopsis thaliana]; similar to
           GTP-binding regulatory protein and WD-repeat protein;
           contains 7 WD-40 repeats
          Length = 388

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = +1

Query: 46  VSGLAISKDGWLVYSGPGKSLCIVEPLKNYNSVIDSKQPYCVHFWNRAHNDKIVSVDLS 222
           VSGLA+S+DG L+Y     S+     LK + +  D K   C+  +  AH+D I +V LS
Sbjct: 168 VSGLALSRDGTLLY-----SVSWDRTLKIWRTT-DFK---CLESFTNAHDDAINAVALS 217


>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
           WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
           contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
          Length = 711

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +3

Query: 237 EEMYPNGAADGTVKQWVITNIAQEFKINSTHSHEV 341
           EE + +G++DG++  W++ +   + +I + H + V
Sbjct: 365 EEYFVSGSSDGSICHWIVGHENPQIEIPNAHDNSV 399


>At3g54910.1 68416.m06085 expressed protein various pedicted
           proteins, Arabidopsis thaliana
          Length = 373

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 382 LYPTPVTSSFSL*CTSWLCVEFILNSWAILVITHCL 275
           L+  PV  SF L      C    +  W ++ ++HCL
Sbjct: 29  LHRAPVIESFRLYLIDSKCTPENIKMWVVIAVSHCL 64


>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 665

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 333 HEVHHNEKEEVTGVGYSNEQFAITVGSFGTVVKWDLKSNVVKN 461
           H++   EKE VTG+   +E+ A+T+G   T     ++  ++KN
Sbjct: 583 HDIEEEEKENVTGI--HSEKLALTLGFLRTAPGTTIR--IIKN 621


>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
           SP|Q61493 DNA polymerase zeta catalytic subunit (EC
           2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
           DNA polymerase family B
          Length = 1890

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 318 NSTHSHEVHHNEKEEVTGVGYSNE 389
           +S HSHE+H  EK+     G SN+
Sbjct: 840 DSAHSHEIHAREKQHDEYEGNSND 863


>At1g15620.1 68414.m01877 expressed protein ; expression supported
           by MPSS
          Length = 343

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 490 QYVCPVLTSAATCCC 534
           +YV P++  AATCCC
Sbjct: 317 RYVLPMVICAATCCC 331


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,019,080
Number of Sequences: 28952
Number of extensions: 294202
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)