Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0316
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.0  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    23   2.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   6.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   6.0  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
 Frame = -2

Query: 156 QSAWILEGLCT*RSLLRVVE----PGDSDGHRPSSLPERQDSA 40
           QS W+LE +CT       +     PG + G + +  P  +  A
Sbjct: 278 QSLWVLEKICTTTDAAEFLAAQEIPGQNPGEKTNIAPRERPRA 320


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 605 SIIIVTKLVMDNYYLSICPIVNYYVIHKAIMFPT 504
           S II+T   ++N+Y  I  +   + +HKA    T
Sbjct: 286 SYIILTSF-LNNFYFIIFQVFESFYLHKATTLET 318


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 508 LPGFHNNVGSLISPFSDINSPIN 440
           LPG +    + I  F+ + SPI+
Sbjct: 74  LPGLYTKSANTIRSFTHVESPID 96


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 142 YPGGLFESPHTDENDVQ 192
           YPG ++   HT  N+ Q
Sbjct: 312 YPGEMYNPEHTTVNEAQ 328


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 142 YPGGLFESPHTDENDVQ 192
           YPG ++   HT  N+ Q
Sbjct: 260 YPGEMYNPEHTTVNEAQ 276


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 142 YPGGLFESPHTDENDVQ 192
           YPG ++   HT  N+ Q
Sbjct: 443 YPGEMYNPEHTTVNEAQ 459


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,952
Number of Sequences: 336
Number of extensions: 3778
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)