Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0316
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    33   0.043
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    30   0.40 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   5.0  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   5.0  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   6.6  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    26   6.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.7  

>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 22  ADRPYIGRVLALWQARGAMA-VRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTI 198
           + +P + ++  +W++   +  V V W+  PE+T      + Y   +F++    ++ V  I
Sbjct: 367 SSKPIVSQIYRIWKSDDDINYVTVCWYLRPEQTVHRADAVFYENEVFKTSLYRDHPVSEI 426

Query: 199 SHKCEVLPLAQY 234
             +C V+ + +Y
Sbjct: 427 VGRCFVMYITRY 438


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 246 GRRPVKYSTVYDNNDVYYLAGHYD 317
           G + ++Y ++YDN  + Y +GH D
Sbjct: 86  GNKDIQYVSIYDNKRISYFSGHTD 109


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 79  AVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTISHKCEVLPLAQYQ 237
           +VR+ W++ P +     + L     LF S H+D  ++ ++  KC V   +Q +
Sbjct: 144 SVRLNWYFRPRDIQ---RHLTDTRLLFASMHSDIYNIGSVQEKCTVKHRSQIE 193


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 376 EVDGFANGMSGSILKVCCV 320
           +V+ + +G SG+ILK CC+
Sbjct: 15  KVNYYEDGESGAILKTCCI 33


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 35  TSAESWRSGRLEGRWPSESPGST 103
           TSAESW +GR   R P    G T
Sbjct: 62  TSAESWGTGRALARIPRVGGGGT 84


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 35  TSAESWRSGRLEGRWPSESPGST 103
           TSAESW +GR   R P    G T
Sbjct: 62  TSAESWGTGRALARIPRVGGGGT 84


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 270 CCT*PVVAHALLVLSKRQHLTFMRNRLNIVLICVRGFEQSAW 145
           C +   + +  L+ +   H T M +  N V +C++ FE   W
Sbjct: 720 CASKEELLYVCLIYTIWTHCTDMDSMDNCVYLCIQKFESYGW 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,716
Number of Sequences: 5004
Number of extensions: 60931
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)