Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0316
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0178 + 13127669-13127741,13127831-13128173,13128308-131283... 49 5e-06
08_02_0704 + 20197529-20197601,20197720-20198062,20198194-201982... 46 3e-05
07_01_0623 + 4638952-4639024,4640422-4640439,4641312-4641660,464... 42 7e-04
01_05_0666 + 24132641-24132768,24134854-24134860,24135042-241352... 40 0.003
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217... 39 0.005
03_06_0322 + 33114988-33115130,33116972-33117024,33117432-331177... 38 0.006
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 37 0.015
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715 36 0.045
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 32 0.56
08_01_0213 - 1703682-1703696,1703824-1703919,1704033-1704104,170... 29 3.0
11_06_0125 - 20356683-20357071,20359531-20362285 29 3.9
09_04_0303 - 16505782-16506902,16507232-16507292 28 9.1
04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268 28 9.1
04_01_0072 - 784922-785567,785673-786406 28 9.1
>09_03_0178 +
13127669-13127741,13127831-13128173,13128308-13128376,
13129706-13129844,13130010-13130021
Length = 211
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 31 PYIGRVLAL-WQARGAMAVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTISHK 207
PY+GRV L RG++ VRV W+Y PEE+ + LF S H D TI K
Sbjct: 40 PYVGRVERLETDGRGSVRVRVRWYYRPEESKGGRRQFHGAKELFLSDHFDTQSAHTIEGK 99
Query: 208 CEVLPLAQY 234
C V Y
Sbjct: 100 CVVHSFKNY 108
>08_02_0704 +
20197529-20197601,20197720-20198062,20198194-20198262,
20199341-20199479,20199727-20199786
Length = 227
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 25 DRPYIGRVLAL-WQARGAMAVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTIS 201
++PY+ RV + RG++ VRV W+Y PEE+ + LF S H D TI
Sbjct: 38 NQPYVARVEKMELDGRGSVRVRVRWYYRPEESKGGRRQFHGAKELFLSDHFDMQSANTIE 97
Query: 202 HKCEVLPLAQY 234
KC V Y
Sbjct: 98 GKCVVHSFKNY 108
>07_01_0623 +
4638952-4639024,4640422-4640439,4641312-4641660,
4643917-4643985,4645587-4645722,4646835-4646870
Length = 226
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 31 PYIGRVLALWQA--RGA-MAVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTIS 201
PY+ RV A+ A RG + VRV W+Y PEE+ + +F S H D TI
Sbjct: 46 PYVARVEAIEAAGSRGTNVRVRVRWYYRPEESMGGRRPFHGAKEVFLSDHYDVQSADTIE 105
Query: 202 HKCEVLPLAQY 234
KC V Y
Sbjct: 106 GKCNVHSFRSY 116
>01_05_0666 +
24132641-24132768,24134854-24134860,24135042-24135230,
24136017-24136185,24136299-24136744,24137540-24137563,
24137736-24137828,24138806-24138884,24138979-24139063,
24139479-24139788,24140471-24140614
Length = 557
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +1
Query: 7 LSTGRADRPYIGRVLALWQARGAMAVRVAWFYHPEE 114
L +G ++ PYIG+++ +WQ A V++ WF+ P+E
Sbjct: 44 LMSGESE-PYIGKIIKIWQQNQAKKVKILWFFLPDE 78
>01_05_0174 +
18919759-18920265,18920381-18920443,18921060-18921761,
18922934-18923068,18923391-18923474,18924095-18924151,
18924290-18924376,18924963-18925205
Length = 625
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +1
Query: 25 DRPYIGRVLALWQARGAMAVRVAWFYHPEETPL---CTQTLQYPGGLFESPHTDENDVQT 195
++PY+ + + + G+++V WFY PEE + LF S H D+ ++
Sbjct: 182 EKPYVAILKDITETEGSLSVTGQWFYRPEEADKKGGGSWKASDTRELFYSFHIDDVPAES 241
Query: 196 ISHKCEVLPLAQYQE 240
+ HKC V + Q+++
Sbjct: 242 VMHKCVVHFIPQHKK 256
>03_06_0322 +
33114988-33115130,33116972-33117024,33117432-33117780,
33118450-33118518,33119015-33119150,33120048-33120080
Length = 260
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +1
Query: 1 VFLSTGRADRPYIGRVLALWQARGAMA----VRVAWFYHPEETPLCTQTLQYPGGLFESP 168
+ ++ + +PY+ RV + +A G A ++V W+Y PEE+ + +F S
Sbjct: 71 LMMAPDSSKKPYVARVEEI-EATGPQASQVKIKVRWYYRPEESIGGRRPFHGSKEVFLSD 129
Query: 169 HTDENDVQTISHKCEVLPLAQY 234
H D TI KC V Y
Sbjct: 130 HYDSQSADTIEGKCYVHTFRDY 151
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 31 PYIGRVLALWQAR-GAMAVRVAWFYHPEETPLC--TQTLQYPGGLFESPHTDENDVQTIS 201
P+IG + + + G +RV+W Y P + L TQ P +F S H DE ++
Sbjct: 49 PFIGLIRWIEKKEEGFPKLRVSWLYRPADIKLNKGTQLCAAPNEIFYSFHQDETSAVSLL 108
Query: 202 HKCEV 216
H C+V
Sbjct: 109 HPCKV 113
>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
Length = 1536
Score = 35.5 bits (78), Expect = 0.045
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +1
Query: 31 PYIGRVLALW-QARGAMAVRVAWFYHPEETPLCTQTLQY---PGGLFESPHTDENDVQTI 198
P+IG + + Q G +RV+W Y P + L + LQ P +F S H DE ++
Sbjct: 21 PFIGLIRWIEKQEEGYPKLRVSWLYRPADIKL-NKGLQLDAAPNEIFYSFHQDETSAVSL 79
Query: 199 SHKCEV 216
H C+V
Sbjct: 80 LHPCKV 85
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = +1
Query: 34 YIGRVLALW-QARGAMAVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTISHKC 210
+ R+ +LW + G +V W+ PEET Q L+ + + +++TI C
Sbjct: 240 WAARIESLWREPDGIFWAKVRWYIIPEETAAGRQPHNLRRELYRTNDLADIEMETILRHC 299
Query: 211 EVLPLAQYQER--MGDD 255
V+ ++++ GDD
Sbjct: 300 YVMSPKEFKDASDQGDD 316
>08_01_0213 -
1703682-1703696,1703824-1703919,1704033-1704104,
1704372-1704444,1704508-1704710,1705058-1706330,
1706800-1706868,1706940-1707088,1707275-1707487,
1708385-1708669
Length = 815
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 24 RPALHRQSPGALAGSRGDGRQSRLVLPP*GDSSMYTNPPVS 146
R A R SP AG+ G GR + P G S + PP S
Sbjct: 15 RGAAPRWSPCTPAGADGSGRAAHATPPASGGCSSHVTPPAS 55
>11_06_0125 - 20356683-20357071,20359531-20362285
Length = 1047
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 326 ADFENGTGHSVCESIHLLACHGSLVLYCRNKVCLSVE 436
+D E G S+CES+ L HG ++ NK+CL ++
Sbjct: 949 SDSEFTQGLSLCESVSL-GLHGKVMDIVDNKLCLGID 984
>09_04_0303 - 16505782-16506902,16507232-16507292
Length = 393
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 167 GDSNNPPGYWRVCVHRGVSSGW*NQATLTAIAPRACQSARTLPM*GRSARPV 12
GDS+ PGY V V +GVS+ A+ P R M G P+
Sbjct: 286 GDSSLQPGYKTVMVVQGVSAAMAGGASALVTMPLDTIKTRMQVMDGEGGEPI 337
>04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268
Length = 667
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 209 HL*EIV*TSFSSVCGDSNNPPGYWRVC 129
HL S +SVC DS+N PGY+ C
Sbjct: 161 HLDSYACASSNSVCIDSSNGPGYFCKC 187
>04_01_0072 - 784922-785567,785673-786406
Length = 459
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 383 CHGSLVLYCRNKVCLSVELINWRIYVRK 466
C G L +YC+NK + + L N + V K
Sbjct: 230 CRGVLYVYCQNKYVMRISLSNGKYQVIK 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,857,013
Number of Sequences: 37544
Number of extensions: 423294
Number of successful extensions: 1228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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