Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0316
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38914| Best HMM Match : BAH (HMM E-Value=1.3e-08)                   81   7e-16
SB_38631| Best HMM Match : BAH (HMM E-Value=3.9e-10)                   81   7e-16
SB_54380| Best HMM Match : LEM (HMM E-Value=0.5)                       37   0.015
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.061
SB_56374| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_51347| Best HMM Match : CBM_14 (HMM E-Value=4.5e-08)                28   9.3  
SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    28   9.3  

>SB_38914| Best HMM Match : BAH (HMM E-Value=1.3e-08)
          Length = 733

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = +1

Query: 31  PYIGRVLALWQA-RGAMAVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTISHK 207
           PY+G++ ++W+   G M V+V W+YHPEET    +       L+ S H DEN++QTISHK
Sbjct: 625 PYVGKIESMWEGWNGCMVVKVRWYYHPEETKQGRRPGDVQNSLYRSTHVDENEIQTISHK 684

Query: 208 CEVLPLAQYQERM 246
           CEV+    Y+ER+
Sbjct: 685 CEVVSPEDYKERV 697


>SB_38631| Best HMM Match : BAH (HMM E-Value=3.9e-10)
          Length = 216

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = +1

Query: 31  PYIGRVLALWQA-RGAMAVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTISHK 207
           PY+G++ ++W+   G M V+V W+YHPEET    +       L+ S H DEN++QTISHK
Sbjct: 108 PYVGKIESMWEGWNGCMVVKVRWYYHPEETKQGRRPGDVQNSLYRSTHVDENEIQTISHK 167

Query: 208 CEVLPLAQYQERM 246
           CEV+    Y+ER+
Sbjct: 168 CEVVSPEDYKERV 180


>SB_54380| Best HMM Match : LEM (HMM E-Value=0.5)
          Length = 731

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +1

Query: 13  TGRADRPYIGRVLALWQA-----RGAMAVRVAWFYHPEET 117
           T R D+P++ RV  LW+       G M + V W+Y PE+T
Sbjct: 418 TRRKDQPFVARVSGLWEEDEGPNAGEMMMSVLWYYRPEQT 457


>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +1

Query: 25   DRPYIGRVLALWQAR-GAMAVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTIS 201
            D  YI R+  +W  R G   V   WF  P ET      + Y   +F S   + +    I 
Sbjct: 1041 DYLYIARLDKIWTDRNGEGWVHGPWFIGPGETQHLPSKMFYEQEVFLSSLEEVSPAVCIM 1100

Query: 202  HKCEVLPLAQY 234
             KC VLPL  Y
Sbjct: 1101 GKCMVLPLRDY 1111



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 28   RPYIGRVLALW-QARGAMAVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTISH 204
            +P++  +  LW    G   +   W+Y PEET            +F+S +     +  +  
Sbjct: 795  QPHVVLIEKLWVDTSGEKWLYGNWYYRPEETFHLATRKFLEKEVFKSDYFAPAKISKVLG 854

Query: 205  KCEVLPLAQY 234
            KC V+ + +Y
Sbjct: 855  KCHVMSVKEY 864


>SB_56374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 253 RRPCAPGTEQAAAPHI-YEKSSEHRSHLCAGIRTIRLDTGGFVYIEESP 110
           RR    G     AP + Y+ S+E R+HL AG++ ++  T GF+   E P
Sbjct: 190 RRWSQIGEHNVQAPMVKYQMSAETRNHLVAGLQNVQ-STHGFLAPLEVP 237


>SB_51347| Best HMM Match : CBM_14 (HMM E-Value=4.5e-08)
          Length = 60

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -1

Query: 253 RRPCAPGTEQAAAPHI 206
           RRPCAPGTE     HI
Sbjct: 32  RRPCAPGTEWRQQDHI 47


>SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 912

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 249 RRPVKYSTVYDNNDVYYLAGHYDPTQQTL 335
           +RP+ +STVY++++  +   HYD  +QT+
Sbjct: 877 KRPIAHSTVYEDSEWVF---HYDKGKQTI 902


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 1   VFLSTGRADRPYIGRVLALWQA--RGAMAVRVAWFYHPEETP 120
           V++ + R D PY    +  ++   R  M V V W+Y P E P
Sbjct: 78  VYIDSQRPDVPYFICSIKEFRTSRRENMTVTVRWYYRPSEVP 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,881,872
Number of Sequences: 59808
Number of extensions: 482923
Number of successful extensions: 1101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)