Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0316
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjac...    43   2e-04
At4g04260.1 68417.m00603 bromo-adjacent homology (BAH) domain-co...    38   0.005
At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjac...    38   0.009
At4g11560.1 68417.m01853 bromo-adjacent homology (BAH) domain-co...    35   0.050
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic...    32   0.47 
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co...    31   0.82 
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co...    31   0.82 
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co...    31   0.82 
At3g62910.1 68416.m07067 peptide chain release factor, putative ...    29   3.3  
At2g25120.1 68415.m03005 bromo-adjacent homology (BAH) domain-co...    29   3.3  
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c...    29   3.3  
At4g23120.1 68417.m03331 bromo-adjacent homology (BAH) domain-co...    28   5.8  
At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR...    28   7.6  

>At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjacent
           homology (BAH) domain-containing protein contains Pfam
           domain, PF00628: PHD-finger and PF01426: BAH domain
          Length = 228

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   VFLSTGRADRP-YIGRVLAL-WQARGAMA-VRVAWFYHPEETPLCTQTLQYPGGLFESPH 171
           V + +    +P Y+ RV A+   ARG+ A VRV W+Y PEE+    +       +F S H
Sbjct: 29  VLMRSSEPGKPSYVARVEAIETDARGSHAKVRVRWYYRPEESIGGRRQFHGAKEVFLSDH 88

Query: 172 TDENDVQTISHKCEVLPLAQYQ--ERMGDD 255
            D     TI  KC+V   + Y   + +G+D
Sbjct: 89  FDFQSADTIEGKCKVHSFSSYTKLDSVGND 118


>At4g04260.1 68417.m00603 bromo-adjacent homology (BAH)
           domain-containing protein similar to ES43 [Hordeum
           vulgare] GI:1345528; contains Pfam profile PF01426: BAH
           domain
          Length = 193

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 31  PYIGRVLALW-QARGAMAVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTISHK 207
           PY+ RV  +   AR  + V   W+Y PEE+    + L     LF S H D     TI  K
Sbjct: 10  PYVARVEKIEADARNNVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHFDVQSAHTIEGK 69

Query: 208 CEVLPLAQY 234
           C V     Y
Sbjct: 70  CIVHTFKNY 78


>At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjacent
           homology (BAH) domain-containing protein contains Pfam
           domain, PF00628: PHD-finger and PF01426: BAH domain
          Length = 196

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +1

Query: 31  PYIGRVLALW-QARGAMAVRVAWFYHPEETPLCTQTLQYPGGLFESPHTDENDVQTISHK 207
           PY+ RV  +   AR  + V   W+Y PEE+    +       LF S H D     TI  K
Sbjct: 10  PYVARVEKIEADARNNVKVHCRWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGK 69

Query: 208 CEVLPLAQY 234
           C V     Y
Sbjct: 70  CIVHTFKNY 78


>At4g11560.1 68417.m01853 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 587

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +1

Query: 19  RADRPYIGRVLALWQAR-GAMAVRVAWFYHPEETPL---CTQTLQYPGGLFESPHTDEND 186
           ++ +PY+  +  + Q + G+M +   WFY PEE                LF S H DE  
Sbjct: 144 KSQKPYVAIIKDITQTKDGSMMILGQWFYRPEEAEKRGGGNWQSSDTRELFYSFHRDEVP 203

Query: 187 VQTISHKCEV 216
            +++ H+C V
Sbjct: 204 AESVMHRCVV 213


>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
           to chromomethylase CMT3 [Arabidopsis thaliana]
           GI:14583092, GI:14647157
          Length = 839

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 4   FLSTGRADRPYIGRVLALWQ-ARGAMAVRVAWFYHPEETPLCT-QTLQYPGGLFESPHTD 177
           ++ +G    P+I +++ +++ A G +     WFY P +T +   + L     +F S   D
Sbjct: 117 YVQSGEGKDPFICKIIEMFEGANGKLYFTARWFYRPSDTVMKEFEILIKKKRVFFSEIQD 176

Query: 178 ENDVQTISHKCEVL 219
            N++  +  K  +L
Sbjct: 177 TNELGLLEKKLNIL 190


>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1611

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 31  PYIGRV-LALWQARGAMAVRVAWFYHPEETPLCTQTL--QYPGGLFESPHTDENDVQTIS 201
           P+IG + L + +    + + V W Y P E  L    L    P  LF S H D     ++ 
Sbjct: 67  PFIGIIRLIIAEEEDKLKLGVNWLYRPTELKLGKGILLEAEPNELFYSFHEDNIPAASLL 126

Query: 202 HKCEV 216
           H C+V
Sbjct: 127 HPCKV 131


>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1613

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 31  PYIGRV-LALWQARGAMAVRVAWFYHPEETPLCTQTL--QYPGGLFESPHTDENDVQTIS 201
           P+IG + L + +    + + V W Y P E  L    L    P  LF S H D     ++ 
Sbjct: 67  PFIGIIRLIIAEEEDKLKLGVNWLYRPTELKLGKGILLEAEPNELFYSFHEDNIPAASLL 126

Query: 202 HKCEV 216
           H C+V
Sbjct: 127 HPCKV 131


>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 1613

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +1

Query: 31  PYIGRV-LALWQARGAMAVRVAWFYHPEETPLCTQTL--QYPGGLFESPHTDENDVQTIS 201
           P+IG + L + +    + + V W Y P E  L    L    P  LF S H D     ++ 
Sbjct: 67  PFIGIIRLIIAEEEDKLKLGVNWLYRPTELKLGKGILLEAEPNELFYSFHEDNIPAASLL 126

Query: 202 HKCEV 216
           H C+V
Sbjct: 127 HPCKV 131


>At3g62910.1 68416.m07067 peptide chain release factor, putative
           similar to peptide chain release factor 1 [Escherichia
           coli] GI:147567; contains Pfam profiles PF00472:
           Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain
          Length = 422

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 128 HKPSSIQADCSNPRTQMRTMFRRF 199
           HKPS I+  C+  RTQ+R   R F
Sbjct: 303 HKPSGIRIFCTEERTQIRNKARAF 326


>At2g25120.1 68415.m03005 bromo-adjacent homology (BAH)
           domain-containing protein contains Pfam profile PF01426:
           BAH domain
          Length = 380

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 28  RPYIGRVLALWQARGAMAVRVA--WFYHPEETP---LCTQTLQYPGGLFESPHTDENDVQ 192
           +PY   +  ++       V++A  WFY PE+     +     +    LF S H DE   +
Sbjct: 112 KPYCAIIKDIYIPNKEKYVKLAVHWFYRPEDVDKKHVGKWESKDSRNLFYSFHRDEVFAE 171

Query: 193 TISHKCEV 216
           ++ HKC V
Sbjct: 172 SVKHKCVV 179


>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
           chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
           thaliana]
          Length = 791

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = +1

Query: 34  YIGRVLALWQAR-GAMAVRVAWFYHPEETPL-CTQTLQYPGGLFESPHTDENDVQTISHK 207
           +I +V+ L++A  G    R  W+Y PE+T +     L  P  +F S   ++N +  I  K
Sbjct: 98  FIAKVIELFEADDGVPYCRFRWYYRPEDTLIERFSHLVQPKRVFLSNDENDNPLTCIWSK 157

Query: 208 CEV--LPLAQYQERM 246
             +  +PL +   R+
Sbjct: 158 VNIAKVPLPKITSRI 172


>At4g23120.1 68417.m03331 bromo-adjacent homology (BAH)
           domain-containing protein weak similarity to ES43
           [Hordeum vulgare] GI:1345528; contains Pfam profile
           PF01426: BAH domain
          Length = 360

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = +1

Query: 1   VFLSTGRADRPYIGRVLALWQAR--GAMAVRVAWFYHPEETP---LCTQTLQYPGGLFES 165
           V L     ++PY+  +  ++  R  G + + V W Y PEE     +     +    LF S
Sbjct: 65  VLLVPEDGEKPYVAIIKDIYTQRKEGHVKLEVQWLYRPEEVEKKYVGNWKSKGSRDLFYS 124

Query: 166 PHTDENDVQTISHKCEV 216
            H DE   +++   C V
Sbjct: 125 FHRDEVFAESVKDDCIV 141


>At1g63750.1 68414.m07214 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1131

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 244 CAPGTEQAAAPHIYEKSSEHRSHLCAGI 161
           C    EQ++ PH +EK +   +HLC  +
Sbjct: 360 CKFAFEQSSPPHAFEKLAARITHLCGNL 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,711,288
Number of Sequences: 28952
Number of extensions: 321696
Number of successful extensions: 882
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)