Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0315
(794 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 31 0.19
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 28 1.8
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c... 27 4.1
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 26 7.1
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 7.1
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 7.1
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 7.1
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 26 7.1
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 9.4
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 9.4
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 31.1 bits (67), Expect = 0.19
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -3
Query: 621 GIEAFQVDQNLFHF--LFEHFFQVLVPTHQFHEYLFEISQVSISSLAEKMQVLVLGDSPS 448
G E+ V+Q +F L E V + +SQV S+L + +VL L P
Sbjct: 42 GNESVSVEQEIFDLSQLSERPVSETVSKASIPTNINGLSQVKPSALEKSQEVLSLQKLPI 101
Query: 447 IDTEPPGSSRPPAMSTSN 394
P G PA++TSN
Sbjct: 102 KGRRPAGRRGRPALNTSN 119
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 212 SIIGSTDQDQKKR*EEKYDPNGFRDALVQGLERAGG--DLDAAYK 340
+I TD+ +K+R KYD R A+++ R GG DL+ +++
Sbjct: 186 AIKSETDEIEKQRYSNKYDTKVLRKAILEKSLRMGGIHDLEQSHE 230
>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
catalytic subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 561 QVLVPTHQFHEYLFEISQVSISSL 490
Q+ HQ HEYLF++ S S+
Sbjct: 13 QIAAFVHQIHEYLFQVQMTSGPSM 36
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 53 HNFCRKYEKFLFFAESQPSEQVI 121
H + R +E+F+ ++SQP +Q++
Sbjct: 176 HQYARYFERFVQVSQSQPIQQLL 198
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 445 RHRTARQQQAASNEYIEYDFA 383
R RT +Q + +YIEYDF+
Sbjct: 43 RKRTFDEQSEITKDYIEYDFS 63
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 498 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 397
SSL + M V DSP ++ E G S P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 320 RHRPAPDPVPERRGNRSGHTSLLISFSGLDPL 225
R+ P P+PE + HT L++ G++ L
Sbjct: 855 RNEMLPSPIPEIQRQNLSHTILMLKAMGINDL 886
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +2
Query: 611 ASIPEQRIKLARMTALWDR*RMRAPSVLLVLVNEHLLKDNLALDFVLEXFPSSNQ 775
AS+P++ + ++ L+ + + + L++ HL D F ++ +PS NQ
Sbjct: 174 ASLPQEDVCTENLSPLFKLLPCKRKAGIASLLDSHLFFDTDWHSFSIDVYPSENQ 228
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 588 FHFLFEHFFQVLVPTHQFHEYLFEISQVSISSLAEKMQVLVL 463
F+ LF+H + LV + HEY I ++ S+ AE + ++L
Sbjct: 98 FYELFKHKYSTLVGAQKAHEYRTSI-YLAASASAELLADIML 138
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +3
Query: 192 SQKVEKPVLSGQRIKTRKRDEKRSMTRTVSATLWYRVWSGPVAISTQPTST 344
++KV+K V +G+ + R DE ++ + + +Y+V P PT +
Sbjct: 224 TRKVQKEVPTGELYEKRCADEFKTRKDSGNGATYYKVIPDPSVNKDTPTES 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,429,522
Number of Sequences: 5004
Number of extensions: 74620
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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