Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0315
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 46 3e-05
06_03_1320 - 29292986-29293005,29293222-29293282,29293530-292938... 30 1.8
06_01_0218 + 1647624-1647757,1648044-1648112,1648493-1648549,164... 30 1.8
03_05_0600 + 26021863-26022469,26022562-26022992 30 1.8
05_04_0172 + 18718661-18718930,18719410-18720252,18720326-187203... 29 3.2
08_02_1266 - 25721277-25721354,25721429-25722236,25724215-25724567 29 4.3
06_01_0707 + 5136210-5136584 29 5.6
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 29 5.6
09_04_0258 - 16175258-16176069,16176111-16176414 28 7.4
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 28 7.4
01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041 28 7.4
12_02_0749 - 22758317-22760407 28 9.8
12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580... 28 9.8
05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739... 28 9.8
05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919 28 9.8
02_04_0610 + 24335153-24337724,24337835-24338256 28 9.8
01_01_0012 + 71903-72935,73468-73981,74619-76008 28 9.8
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 46.4 bits (105), Expect = 3e-05
Identities = 26/76 (34%), Positives = 40/76 (52%)
Frame = +2
Query: 206 KTSIIGSTDQDQKKR*EEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDYRRYG 385
K ++ G + +K+ DP F DA+VQ GDL+ K ++S S L++ RYG
Sbjct: 70 KPTLGGQRIKTRKRNIAAPLDPASFSDAIVQIYLDNAGDLELVAKSIES--SDLNFSRYG 127
Query: 386 EVIFDVLIAGGLLLPG 433
+ F+V+ GG PG
Sbjct: 128 DTFFEVVFIGGRTQPG 143
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3
Query: 204 EKPVLSGQRIKTRKRD 251
EKP L GQRIKTRKR+
Sbjct: 69 EKPTLGGQRIKTRKRN 84
>06_03_1320 -
29292986-29293005,29293222-29293282,29293530-29293804,
29293881-29293974
Length = 149
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -1
Query: 683 EHASVTDPTVQSCAPA*CAVRESKPFK*TRTFFISSSNIFSKYL 552
E +S+ DP+ ++C P+ C + P T++ + NI +++
Sbjct: 32 ESSSMNDPSARACRPSMCEENDMDPLALTKSVLLMFPNISEEFI 75
>06_01_0218 +
1647624-1647757,1648044-1648112,1648493-1648549,
1648768-1648934,1649661-1649716,1650319-1650490,
1650747-1650810,1651037-1651119,1651243-1651334,
1652028-1652134,1652398-1652461,1652630-1652770
Length = 401
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Frame = -1
Query: 320 RHRPAPDPVPERRGNRSG------HTSLLISFSG 237
R RPAPDPV RG+R+ H SL + FSG
Sbjct: 12 RRRPAPDPVAVLRGHRAAVNDVCFHPSLPLIFSG 45
>03_05_0600 + 26021863-26022469,26022562-26022992
Length = 345
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3
Query: 453 PSIDTEPPGSSRPPA 409
PS+D EPPG S PPA
Sbjct: 220 PSLDNEPPGGSTPPA 234
>05_04_0172 +
18718661-18718930,18719410-18720252,18720326-18720354,
18720439-18720529,18720625-18720779,18721552-18721662,
18722579-18722645
Length = 521
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 561 GKNVRRGNEKGSGLLERLRFPNSASS 638
GK RRG +G GLL+RL P+S+SS
Sbjct: 36 GKGQRRGRGRGRGLLQRL--PSSSSS 59
>08_02_1266 - 25721277-25721354,25721429-25722236,25724215-25724567
Length = 412
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/79 (29%), Positives = 33/79 (41%)
Frame = +3
Query: 456 NRPRPTPASSPPMRIWTPAKFRTGIRETDASVQVLGKNVRRGNEKGSGLLERLRFPNSAS 635
+RPRP+ P M + P KF+ V + G K + L+ RFP
Sbjct: 207 SRPRPSMVVMPRMFLSNPKKFKL--------QGVTFYRFQPGQSKVAELILEKRFPRGIP 258
Query: 636 SWRA*LHCGIGNGCVLHPC 692
+ LHC +G +L PC
Sbjct: 259 MFSMPLHC---DGLILIPC 274
>06_01_0707 + 5136210-5136584
Length = 124
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 374 GSRVLIRPSLGTCRLRRDRHRPAP 303
G RVL+ PS GT LRR RP P
Sbjct: 70 GGRVLLSPS-GTSSLRRSHRRPPP 92
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 559 LEKMFEEEMKKVLVY-LKGFDSRTAHQAGAHDCTVGSVTDACSIRAAGPGERTSAEGQP 732
L F+ + +++LVY S + G+H + + T C R AG RTS++G+P
Sbjct: 434 LRAYFQAKEERLLVYDYYPNGSLFSLLHGSHQNPLLTRTTVCRCRQAGSSSRTSSKGKP 492
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 386 RHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNR 273
R G+ +P G RLRR RH A P +R G R
Sbjct: 136 RGEAGAPEAEQPRGGAVRLRRLRHAAAVPPARQRHGRR 173
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/62 (27%), Positives = 22/62 (35%)
Frame = +3
Query: 462 PRPTPASSPPMRIWTPAKFRTGIRETDASVQVLGKNVRRGNEKGSGLLERLRFPNSASSW 641
P P PA+ P W P + R A V+ K RRG S + F W
Sbjct: 77 PPPPPAAPSPAPAWQPPR-RAAEDAALAQRPVVAKKTRRGPRSRSSQYRGVTFYRRTGRW 135
Query: 642 RA 647
+
Sbjct: 136 ES 137
>01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041
Length = 425
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = -3
Query: 612 AFQVDQNLFHFLFEHFFQVLVPTHQFHEYLFEISQVSISSLAEKMQVLVLGDSPSIDTEP 433
A+Q D F F H + +L ++H YL E+ + + + ++++V+ + S P
Sbjct: 249 AYQADYKEGPFSFLHCWNILRDQPKWHAYLEELEKPNKPKMDDEVEVM---EQMSTPNSP 305
Query: 432 PGSSRPPAMSTS 397
RP T+
Sbjct: 306 EDIKRPVGTKTA 317
>12_02_0749 - 22758317-22760407
Length = 696
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = -1
Query: 488 RRRCRCWSWAIRRPSTPNR 432
RRRCR S A RRP TP R
Sbjct: 14 RRRCRRLSGANRRPETPPR 32
>12_02_0617 +
21256745-21256943,21257454-21257647,21257836-21258042,
21258115-21258232,21258325-21258401,21258513-21258692,
21259312-21259356,21260309-21260413,21261115-21261261
Length = 423
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = -2
Query: 631 ALFGNRSLSSRPEPFSFPLRTFFPSTCTDASVSRIPVRNFAGVHILIGGEDAGVGLGRFA 452
A F S +RP P PL F P T A + P+R A V A V +G
Sbjct: 7 ARFSPSSNPARPPPPRLPLPRFLPPTPPQALLRARPLRTSAAV----AAAAAVVEVGGVK 62
Query: 451 VHRHRTARQQQAASN 407
+ R +++ +N
Sbjct: 63 IAREDVVKEEDPTNN 77
>05_05_0098 +
22373384-22373522,22373566-22373772,22373879-22373953,
22374611-22374744,22375189-22375674,22375854-22376621,
22377367-22377594,22378294-22378773
Length = 838
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 616 RSLSSRPEPFSFPLRTFFPSTC-TDASVSRIPVRNFAGVHILIGGEDAGVGLG 461
R S RP P FP + S D +R P + + L GGE G+GLG
Sbjct: 22 RQASLRPLPLIFPESSATASGWGADCGTTRSPPPPSSPLPSLHGGEGGGLGLG 74
>05_03_0638 - 16489181-16489210,16489486-16489806,16489878-16489919
Length = 130
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 370 LPTLWRSHIRCTHCWRPAAAGRF 438
LP + + C +C RP AAGRF
Sbjct: 89 LPAVAADLVDCMNCGRPVAAGRF 111
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -1
Query: 365 VLIRPSLGTCRLRRDRHRPAPDPVPERRGNRSGHTSLLISFSGLDPLTR*YWFFYLLTHT 186
V + + G C D H P+ V R+ +S T LLI G LT YL+ T
Sbjct: 581 VYLEGNRGLCGGVMDLHMPSCPQVSHRKERKSNLTRLLIPIVGFLSLTVLICLIYLVKKT 640
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 628 AHQAGAHDCTVGSVTDACSIRAAGPGERTSAEGQPG 735
A QA A T+ S T+A + RAA + AEG G
Sbjct: 468 AQQAAARAATMKSATEAAAARAAEISRKLKAEGFGG 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,377,486
Number of Sequences: 37544
Number of extensions: 563919
Number of successful extensions: 2149
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2145
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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