Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0315
(794 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20) 87 2e-17
SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 31 0.81
SB_40827| Best HMM Match : HemN_C (HMM E-Value=2) 30 1.9
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 30 1.9
SB_21743| Best HMM Match : rve (HMM E-Value=4e-17) 30 1.9
SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_49610| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=3.9) 29 3.3
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06) 29 4.3
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_48617| Best HMM Match : Drf_FH1 (HMM E-Value=3.7) 29 5.7
SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_41764| Best HMM Match : PP-binding (HMM E-Value=2.9) 29 5.7
SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0) 28 7.6
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40) 28 7.6
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 28 7.6
SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19) 28 7.6
>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
Length = 457
Score = 86.6 bits (205), Expect = 2e-17
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 6/91 (6%)
Frame = +2
Query: 254 EEKYDPNGFRDALVQGLERA---GGDLDAAYKYLDSAGSKLDYRRYGEVIFDVLIAGGLL 424
+EK+ P GFRDA++ GL G DL+ K+LD++G KL+YR YGE +FDVL A
Sbjct: 3 KEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGEFLFDVLFAA--- 59
Query: 425 LPGGSVSMDGESP---KTNTCIFSANEDMDT 508
PGGS+ DG +P KTN CIF AN D +T
Sbjct: 60 -PGGSIVEDGPNPSTYKTNICIFEANNDNET 89
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = +1
Query: 508 LRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGF 615
LR Q+ KL+ RY+YL+K +E+EM K+L++LKGF
Sbjct: 90 LRKHVQMHNKLICRYRYLQKSYEDEMNKILLFLKGF 125
>SB_42035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 33.1 bits (72), Expect = 0.27
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +3
Query: 120 SSGETAPLD*VVKGIRLIRTIYCMSQKVEKPVLSGQRIKTRKRDEKRSMTRTVSATLWYR 299
SSG T P K + + TI C S + P++ G R+K +RD KR + T+ + R
Sbjct: 272 SSGVTLP-----KALHITATILCYSISLLYPLIYGIRVKGIRRDIKRMVCSTLCCIDYVR 326
Query: 300 VWSGPVAISTQPTS 341
S A P +
Sbjct: 327 PISAAEAFLISPAA 340
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 31.5 bits (68), Expect = 0.81
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 188 YESEGRKTSIIGSTDQDQKKR*EEKYDPNGFRDALVQGLERAGGDLDAAYKYLDS--AGS 361
Y GR+ + G+ ++ KK E DPN R +GLE GD +A ++LD+ +G
Sbjct: 1635 YNLRGRRNEVAGAARRECKKLSTE--DPNTRR----KGLENIAGDNEAMMEFLDTQLSGK 1688
Query: 362 KLD 370
LD
Sbjct: 1689 TLD 1691
>SB_40827| Best HMM Match : HemN_C (HMM E-Value=2)
Length = 171
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 517 NFAGVHILIGGEDAGVGLGRFAVHRHRTARQQQAASNEYIE 395
NFAG+ +L GG + G F V +H Q ASN+ E
Sbjct: 119 NFAGLLVLRGGRLVALASGLFQVAKHIKIAPSQEASNKIQE 159
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 517 NFAGVHILIGGEDAGVGLGRFAVHRHRTARQQQAASNEYIE 395
NFAG+ +L GG + G F V +H Q ASN+ E
Sbjct: 1673 NFAGLLVLRGGRLVALASGLFQVAKHIKIAPSQEASNKIQE 1713
>SB_21743| Best HMM Match : rve (HMM E-Value=4e-17)
Length = 865
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 508 LRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDSRTAHQAGAHDCTVGSVTDACSI 687
L ++VF++ RRY +EK LV G + R +A H+ V + ++ S+
Sbjct: 757 LHQGDKVFIRDQRRYGEIEKKLASPRSYQLVTENGSEIRRNRRALVHE-PVATSGESSSL 815
Query: 688 RAAG--PGERTSAEGQPG 735
+ P R EG PG
Sbjct: 816 PSPSNRPPVREGGEGSPG 833
>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 361 KTRLPTLWRSHIRCTHCWRPAAAG 432
+ RLP WRS R H W+P+ G
Sbjct: 19 RDRLPFQWRSRARRNHGWKPSLKG 42
>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 540 QFHEYLFEISQ---VSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 409
Q HEY SQ +++++ ++QV PSI ++PP PPA
Sbjct: 123 QDHEYQRSTSQDRHIAMTTRKAQVQVSASSSGPSIASQPPQPPAPPA 169
>SB_49610| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=3.9)
Length = 200
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 517 NFAGVHILIGGEDAGVGLGRFAVHRHRTARQQQAASNEYIE 395
NFAG+ +L GG + G F V +H + ASN+ E
Sbjct: 123 NFAGLLVLRGGRLVALASGLFQVSKHIKIAPSEEASNKIQE 163
>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 521 SKFRRCPYPHWRRRCRCW 468
SK RR HWR R RCW
Sbjct: 237 SKCRRSALHHWRARKRCW 254
>SB_33131| Best HMM Match : DUF1168 (HMM E-Value=1.7e-06)
Length = 114
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 487 GEDAGVGLGRFAVHRHRTARQQQAASNEYIEYDFAIASVV 368
G AG G G F H +R R+++ EYIE ASV+
Sbjct: 69 GSSAGAGSGEF--HVYRATRRREYNRQEYIEKKSKEASVI 106
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 465 LGDSPSIDTEPPGSSRPPAMSTSNMTSP*RR*SSFDPAES 346
L D+P+ + PP S+ P A ST M+S F PA +
Sbjct: 162 LWDAPTPTSAPPASAPPKAQSTQGMSSGTSEQPWFSPANT 201
>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 579 LFEHFFQVLVPTHQFHEYLFEISQVSIS 496
+F H VPT QF++Y EIS IS
Sbjct: 140 VFAHIISTEVPTVQFNQYWVEISDALIS 167
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 508 LRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDSRTAHQAGAHDCTVGSVTDACSI 687
L ++VF++ +RY +EK LV G + R +A H+ V + ++ S+
Sbjct: 2930 LHQGDKVFIRDQQRYGEIEKKLASPRSYQLVTENGSEIRRNRRALVHE-PVATSGESSSL 2988
Query: 688 RAAG--PGERTSAEGQPG 735
+ P R EG PG
Sbjct: 2989 PSPSNRPPVREGGEGSPG 3006
>SB_4361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 508 LRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDSRTAHQAGAHDCTVGSVTDACSI 687
L ++VF++ +RY +EK LV G + R +A H+ V + ++ S+
Sbjct: 674 LHQGDKVFIRDQQRYGEIEKKLASPRSYQLVTENGSEIRRNRRALVHE-PVATSGESSSL 732
Query: 688 RAAG--PGERTSAEGQPG 735
+ P R EG PG
Sbjct: 733 PSPSNRPPVREGGEGSPG 750
>SB_48617| Best HMM Match : Drf_FH1 (HMM E-Value=3.7)
Length = 477
Score = 28.7 bits (61), Expect = 5.7
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = -1
Query: 587 FISSSNIFSKYLYRRISFTNTCSKFRRCPYPHWRRRCRCWSWAIRRPSTPNRPAAAGRQQ 408
++SSS IF + L ++F N KF PH R R +WA + + R +
Sbjct: 67 YVSSSIIFGRPLRDTLAFVNRLEKFSN---PHIRPLWR-QAWAAKEDALRTRISHTTESL 122
Query: 407 *VHRI*LRH-SVGSRVLIRPSLGTCRLRRDR 318
H LR ++G+RV ++ G + DR
Sbjct: 123 REHARPLRPLAIGTRVFLQNQQGPNPNKWDR 153
>SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 508 LRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDSRTAHQAGAHDCTVGSVTDACSI 687
L ++VF++ +RY +EK LV G + R +A H+ V + ++ S+
Sbjct: 1057 LHQGDKVFIRDQQRYGEIEKKLASPRSYQLVTENGSEIRRNRRALVHE-PVATSGESSSL 1115
Query: 688 RAAG--PGERTSAEGQPG 735
+ P R EG PG
Sbjct: 1116 PSPSNRPPVREGGEGSPG 1133
>SB_41764| Best HMM Match : PP-binding (HMM E-Value=2.9)
Length = 175
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 517 NFAGVHILIGGEDAGVGLGRFAVHRHRTARQQQAASNEYIE 395
NFAG+ +L GG + G F V +H Q SN+ E
Sbjct: 123 NFAGLLVLKGGRMVALASGLFRVAKHVKLTPPQETSNKIQE 163
>SB_33095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +1
Query: 508 LRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDSRTAHQAGAHDCTVGSVTDACSI 687
L ++VF++ +RY +EK LV G + R +A H+ V + ++ S+
Sbjct: 725 LHQGDKVFIRDQQRYGEIEKKLASPRSYQLVTENGSEIRRNRRALVHE-PVATSGESSSL 783
Query: 688 RAAG--PGERTSAEGQPG 735
+ P R EG PG
Sbjct: 784 PSPSNRPPVREGGEGSPG 801
>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
Length = 816
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 168 LIRTIYCMSQKVEKPVLSGQRIKTRKRDEKRSMTRTVSATLWYRVWSGPV 317
+I+T + + KP KTRKR +KRS + A +++GP+
Sbjct: 577 VIKTQLADTSDIVKPATLAPPTKTRKRLKKRSKVEELFANPMVELFAGPL 626
>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
Length = 1198
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 338 KYLDSAGSKLDYRRYGEVIFDVLIAGGLLLPG-GSVSMDGESPKTNTCIFSANEDMDTCE 514
++ ++ S +DY YGE I D I + GS ++ T++ + +E D E
Sbjct: 724 RFYENNSSSIDYNVYGETINDASIGAEMAKQSDGSADKHSKNATTDSHVAIESESPDVTE 783
Query: 515 ISN 523
N
Sbjct: 784 NKN 786
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 195 QKVEKPVLSGQRIKTRKRDEKRSMTRTVSATLWYRVWSGP 314
+K EK + + K ++R+ +R R LWYR WS P
Sbjct: 563 EKREKERVQKKLEKDKERERQREQKR--KEALWYREWSRP 600
>SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)
Length = 698
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 508 LRNFEQVFVKLMRRYKYLEKMFEEEMKKVLVYLKGFDSRTAHQAGAHD-CTVGSVTDACS 684
L ++VF++ +RY +EK LV G R +A H+ + + +
Sbjct: 515 LHQGDKVFIRDQQRYGEIEKKLASPRSYQLVTENGLGIRRNRRALVHEPVAISGESSSLP 574
Query: 685 IRAAGPGERTSAEGQPG 735
+ P R EG PG
Sbjct: 575 SPSNRPPVREGGEGSPG 591
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,220,886
Number of Sequences: 59808
Number of extensions: 594353
Number of successful extensions: 2048
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2041
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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