Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0315
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 36 0.025
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 35 0.077
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 30 1.7
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 30 2.2
AF024501-1|AAZ91348.1| 590|Caenorhabditis elegans Hypothetical ... 30 2.2
Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical pr... 29 2.9
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 29 2.9
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 29 2.9
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 3.8
Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical p... 29 5.1
Z79752-6|CAB02080.2| 423|Caenorhabditis elegans Hypothetical pr... 29 5.1
AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical ... 29 5.1
Z81549-10|CAI79203.1| 128|Caenorhabditis elegans Hypothetical p... 28 6.7
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 28 6.7
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 6.7
U41007-13|AAA82271.2| 307|Caenorhabditis elegans (s. pombe chro... 28 6.7
AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein... 28 6.7
Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p... 28 8.9
Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical pr... 28 8.9
U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical pr... 28 8.9
AC024763-7|AAF60517.1| 304|Caenorhabditis elegans Pdgf/vegf gro... 28 8.9
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 613 FDSRTAHQAGAHDCTVGSVTDACSIRAAGPGERTSAEGQPG 735
F +RTA QAG C G +D C GP +G PG
Sbjct: 70 FGARTARQAGFEQCNCGPKSDGCPAGPPGPPGEGGQKGNPG 110
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 34.7 bits (76), Expect = 0.077
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 613 FDSRTAHQAGAHDCTVGSVTDACSIRAAGPGERTSAEGQPG 735
F +RTA QAG C G ++ C GP +G PG
Sbjct: 76 FGARTARQAGFEQCNCGPKSEGCPAGPPGPPGEGGQKGNPG 116
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 499 YGHLRNFEQVFVKLMRRYKYLEKM-FEEEMKKVLVYLKGFDSRTAHQAGAHDCTVGSVTD 675
+ + +F + M +K+ E+ + MK V+ G R ++ GA C G+ ++
Sbjct: 28 FNDINSFHDEVIDTMTEFKFNEQQAWNSMMKPTDVF--GRIKRGINKRGAQ-CNCGAQSN 84
Query: 676 ACSIRAAGPGERTSAEGQPGAXLRAG 753
C GP + A+G+ G AG
Sbjct: 85 GCPAGPPGPPGQPGAQGEAGHAGEAG 110
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +1
Query: 499 YGHLRNFEQVFVKLMRRYKYLEKM-FEEEMKKVLVYLKGFDSRTAHQAGAHDCTVGSVTD 675
+ + +F + M +K+ E+ + MK V+ G R ++ GA C G+ ++
Sbjct: 28 FNDINSFHDEVIDTMTEFKFNEQQAWNSMMKPTDVF--GRIKRGINKRGAQ-CNCGAQSN 84
Query: 676 ACSIRAAGPGERTSAEGQPGAXLRAG 753
C GP + A+G+ G AG
Sbjct: 85 GCPAGPPGPPGQPGAQGEAGHAGEAG 110
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +1
Query: 610 GFDSRTAHQAGAHD----CTVGSVTDACSIRAAGPGERTSAEGQPGA 738
G D R A QA A D C G A SI GP +GQPGA
Sbjct: 145 GPDGRPATQASASDFCFDCPPGPPGPAGSIGPKGPNGNPGFDGQPGA 191
>AF024501-1|AAZ91348.1| 590|Caenorhabditis elegans Hypothetical
protein F39E9.4 protein.
Length = 590
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 190 IQYIVLMRRMPLTTQSSGAVSPLDNLFTWL*LSKEQEFFVFSTKI 56
I+ +V M+++ T+ LD +F L LS+ FFV TK+
Sbjct: 315 IEKVVKMKKVIGYTEEYERTGALDEMFETLQLSRSDSFFVLMTKV 359
>Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical
protein F57G4.1 protein.
Length = 838
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = -3
Query: 678 RIRYRS---HSAVMRASLMRCSGIEAFQVDQNLFHFLFEHFFQVLVPTHQFHEYL-FEIS 511
+++YR + + + + G E +QN F F H +L T+ F YL F I
Sbjct: 46 KLQYRQELCYKSTINGCSLEIGGKEEIFKNQNFMEFFFSHLTIILSSTN-FISYLSFSII 104
Query: 510 QVSISSLAEKMQVLVLGDSPSI 445
S S EK++ + +P++
Sbjct: 105 NNSTSKFLEKLKSTLSTKNPAL 126
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 613 FDSRTAHQAGAHDCTVGSVTDACSIRAAGPGERTSAEGQPG 735
F +R A QA C G ++ C GP G+PG
Sbjct: 70 FGTRKARQAYPEQCNCGPKSEGCPAGPPGPPGEGGQSGEPG 110
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 613 FDSRTAHQAGAHDCTVGSVTDACSIRAAGPGERTSAEGQPG 735
F +R A QA C G ++ C GP G+PG
Sbjct: 70 FGTRKARQAYPEQCNCGPKSEGCPAGPPGPPGEGGQSGEPG 110
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +1
Query: 535 KLMRRYKYLEKMFEEEMKKVLVYLKGFDSRTAHQAGAHDCTVGSVTDACSIRAAGPGERT 714
K M+R K + FEE+M +VL G +Q A T G++ D + + ++T
Sbjct: 476 KKMKREKLNQMTFEEKMAQVL----GQQKAVQNQRMADPVTFGALDDTVAWKDPSNEDQT 531
Query: 715 SAEGQPGAXLRAG 753
S +G+ A + G
Sbjct: 532 SEDGKMLAIMGPG 544
>Z83230-10|CAL22704.2| 714|Caenorhabditis elegans Hypothetical
protein Y43F4B.3 protein.
Length = 714
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 571 FEEEMKKVLVYLKGFDSRTAHQAGAHDC--TVGSVTDACSIR 690
F E K+L+Y +G+ T H+ +C T ++ + SIR
Sbjct: 306 FRSEEGKILIYYEGWTCLTLHRLSVEECARTAPTILEEMSIR 347
>Z79752-6|CAB02080.2| 423|Caenorhabditis elegans Hypothetical
protein D2005.6 protein.
Length = 423
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/43 (46%), Positives = 22/43 (51%)
Frame = +3
Query: 453 ANRPRPTPASSPPMRIWTPAKFRTGIRETDASVQVLGKNVRRG 581
A RP P PA SPP R T A R R T ++ LG RRG
Sbjct: 122 AYRPYPQPAPSPPRRSRT-APSRP--RSTAPTMGTLGAESRRG 161
>AL021481-9|CAA16332.3| 714|Caenorhabditis elegans Hypothetical
protein Y43F4B.3 protein.
Length = 714
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 571 FEEEMKKVLVYLKGFDSRTAHQAGAHDC--TVGSVTDACSIR 690
F E K+L+Y +G+ T H+ +C T ++ + SIR
Sbjct: 306 FRSEEGKILIYYEGWTCLTLHRLSVEECARTAPTILEEMSIR 347
>Z81549-10|CAI79203.1| 128|Caenorhabditis elegans Hypothetical
protein F55C9.12 protein.
Length = 128
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 450 TANRPRPTPASSPPMRIWTPAKFRTGIRETDASVQVLGKNVRRGNEKG-SGLLERLRFPN 626
+A+ P P+P+ PP + TP F + Q K + EK G E FP
Sbjct: 24 SADVPLPSPSPPPPPQQLTPDTFPEAEAVATGAPQSPPKTTKSTREKYLEGKAEEALFPT 83
Query: 627 SASS 638
+A+S
Sbjct: 84 AAAS 87
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -3
Query: 576 FEHFFQVLVPTH---QFHEYLFEISQVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 409
+E V+ P+H L +I+ S ++++ +M+ +GD+P + PP + P+
Sbjct: 604 YERTSNVMKPSHFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 662
>Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical
protein C33G3.1a protein.
Length = 793
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -3
Query: 576 FEHFFQVLVPTH---QFHEYLFEISQVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 409
+E V+ P+H L +I+ S ++++ +M+ +GD+P + PP + P+
Sbjct: 510 YERTSNVMKPSHFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 568
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -3
Query: 576 FEHFFQVLVPTH---QFHEYLFEISQVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 409
+E V+ P+H L +I+ S ++++ +M+ +GD+P + PP + P+
Sbjct: 604 YERTSNVMKPSHFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 662
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 507 VSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSNMTSP 382
VS SS V+ +PS P +S P STSN T+P
Sbjct: 467 VSSSSSGSSSTVVTSTITPSTQGVPTSTSNQPTPSTSNPTTP 508
>U41007-13|AAA82271.2| 307|Caenorhabditis elegans (s. pombe
chromosome segregationprotein) homolog protein 1
protein.
Length = 307
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = +2
Query: 290 LVQGLERAGGDLDAAYKYLDSAGSKLDYRRYGEVIFDVLIAGGLLLPGGSVSMDGESPKT 469
LVQ +++ G +LD +K L+ S L+ RR ++ ++ +P SM GE +
Sbjct: 104 LVQNIQQTGLELDGLFKDLEPEPSGLNTRRPPKLELNLERVDE--IPFCQSSMQGEIDE- 160
Query: 470 NTCIFSANEDMDTCEISN 523
N F N T I N
Sbjct: 161 NEIRFDNNSSQSTSSIQN 178
>AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein
protein.
Length = 793
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -3
Query: 576 FEHFFQVLVPTH---QFHEYLFEISQVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPA 409
+E V+ P+H L +I+ S ++++ +M+ +GD+P + PP + P+
Sbjct: 510 YERTSNVMKPSHFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTPPKKEKKPS 568
>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
protein Y41E3.9 protein.
Length = 1440
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 398 DVLIAGGLLLPGGSVSMDGESPKTNTCIFSANEDMDTCEISNRYS*N*CVGTSTW 562
D L+A +L V + E K +C+FS D D E +R + C+ +T+
Sbjct: 1194 DQLLAIQWILTNKVVQLVPEDDKRKSCVFSQQSDDDLLEKEDRKATFYCISKTTF 1248
>Z49938-3|CAA90188.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.2 protein.
Length = 306
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 649 DCTVGSVTDACSIRAAGPGERTSAEGQPGAXLRAG 753
DC G A + GP A+GQPGA AG
Sbjct: 161 DCPAGPPGPAGNPGPKGPSGNAGADGQPGAPGNAG 195
>U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical
protein K04G7.1 protein.
Length = 558
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 521 SKFRRCPYPHWRRRCRCWSWA 459
S+ R HWR RC+C+S A
Sbjct: 66 SRLDRSAPSHWRARCKCFSMA 86
>AC024763-7|AAF60517.1| 304|Caenorhabditis elegans Pdgf/vegf growth
factor relatedprotein 1 protein.
Length = 304
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 506 TCEISNRYS*N*CVGTSTW 562
TCE +N+ N CVG +TW
Sbjct: 217 TCECANKEERNNCVGNATW 235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,356,891
Number of Sequences: 27780
Number of extensions: 444441
Number of successful extensions: 1668
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1667
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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