Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0315
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    53   2e-07
At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    50   2e-06
At5g65990.1 68418.m08308 amino acid transporter family protein s...    31   1.2  
At2g44410.1 68415.m05523 expressed protein                             29   2.7  
At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger) fa...    29   4.7  

>At5g36230.1 68418.m04371 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/88 (34%), Positives = 47/88 (53%)
 Frame = +2

Query: 194 SEGRKTSIIGSTDQDQKKR*EEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDY 373
           S   K ++ G+  + +K+      DP  F DA+VQ      GDL+   K ++S  S L++
Sbjct: 2   SSKEKPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYHDNAGDLELVAKSIES--SDLNF 59

Query: 374 RRYGEVIFDVLIAGGLLLPGGSVSMDGE 457
            RYG++ F+V+  GG   PG   S +GE
Sbjct: 60  TRYGDIFFEVIFIGGRTQPGTVKSDEGE 87


>At1g65220.1 68414.m07394 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein low similarity to SP|P47823
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Oryctolagus
           cuniculus}; contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 411

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 30/88 (34%), Positives = 46/88 (52%)
 Frame = +2

Query: 194 SEGRKTSIIGSTDQDQKKR*EEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLDY 373
           S   K ++ G+  + +K+      DP  F DALVQ      GDL+   + L+S  S L++
Sbjct: 2   SSKEKPTLGGTRIKTRKRNIAAPLDPAAFSDALVQIYLDNAGDLELVARSLES--SDLNF 59

Query: 374 RRYGEVIFDVLIAGGLLLPGGSVSMDGE 457
            RYG++ F+V+  GG    G   S +GE
Sbjct: 60  SRYGDIFFEVVFIGGRTQTGSVKSDEGE 87


>At5g65990.1 68418.m08308 amino acid transporter family protein
           similar to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 427

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -2

Query: 700 DQQHGWSTHPLPIPQCSHA---RQLDALFGNRSLSSRPEPFS 584
           DQ+ G S+H LP    SH+    +   L G R+LSS+P+ F+
Sbjct: 4   DQEAGSSSHSLPSGSSSHSLPPTEDTPLLGPRTLSSQPKTFA 45


>At2g44410.1 68415.m05523 expressed protein 
          Length = 413

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 341 TCRLRRDRHRPAPDPVPERRGNRSGHTSLLISF 243
           T  LRR+R RP+P      + NRS + S  ISF
Sbjct: 319 TTSLRRNRRRPSPAVRASYQRNRSNNASQTISF 351


>At5g60710.1 68418.m07618 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P97280
           Inter-alpha-trypsin inhibitor heavy chain H3 precursor
           {Mesocricetus auratus}; contains Pfam profiles PF00097:
           Zinc finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 704

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 489 PMRIWTPAKFRTGIRETDASVQVLGKNVRRGNEKGSGLLERLRFPNSASS 638
           P+R+ T    +  ++  ++ V   G N+  G +KG+ +L   RF N  SS
Sbjct: 302 PLRLMTETGKQEALQAVNSLVSNGGTNIAEGLKKGARVLIDRRFKNPVSS 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,188,052
Number of Sequences: 28952
Number of extensions: 410814
Number of successful extensions: 1436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)