Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0314
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 159 3e-40
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 159 4e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 159 4e-40
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 97 3e-21
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 91 2e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 4e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.003
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.008
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.008
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.019
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.033
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 31 0.17
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.30
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.53
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 28 1.6
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 27 2.8
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 27 2.8
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.8
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 27 3.8
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 27 3.8
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 27 3.8
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 26 5.0
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 5.0
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 6.6
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 8.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 159 bits (387), Expect = 3e-40
Identities = 74/84 (88%), Positives = 79/84 (94%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 436
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTR 134
Query: 437 EHALLAFTLGVKQLIVGVNKMDST 508
EHALLA+TLGVKQLIV VNKMD+T
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTT 158
Score = 148 bits (358), Expect = 1e-36
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAERELGITI 254
DKLKAERE GITI
Sbjct: 61 DKLKAERERGITI 73
Score = 73.3 bits (172), Expect = 3e-14
Identities = 32/60 (53%), Positives = 42/60 (70%)
Frame = +1
Query: 517 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKCLGSRGWQVERKEG 696
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+E +GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 159 bits (386), Expect = 4e-40
Identities = 73/84 (86%), Positives = 79/84 (94%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 436
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTR 134
Query: 437 EHALLAFTLGVKQLIVGVNKMDST 508
EHALLA+TLGVKQLIV VNKMD+T
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTT 158
Score = 148 bits (358), Expect = 1e-36
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAERELGITI 254
DKLKAERE GITI
Sbjct: 61 DKLKAERERGITI 73
Score = 73.3 bits (172), Expect = 3e-14
Identities = 32/60 (53%), Positives = 42/60 (70%)
Frame = +1
Query: 517 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKCLGSRGWQVERKEG 696
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+E +GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 159 bits (386), Expect = 4e-40
Identities = 73/84 (86%), Positives = 79/84 (94%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 436
IALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTR
Sbjct: 75 IALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTR 134
Query: 437 EHALLAFTLGVKQLIVGVNKMDST 508
EHALLA+TLGVKQLIV VNKMD+T
Sbjct: 135 EHALLAYTLGVKQLIVAVNKMDTT 158
Score = 148 bits (358), Expect = 1e-36
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 215
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 216 DKLKAERELGITI 254
DKLKAERE GITI
Sbjct: 61 DKLKAERERGITI 73
Score = 73.3 bits (172), Expect = 3e-14
Identities = 32/60 (53%), Positives = 42/60 (70%)
Frame = +1
Query: 517 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLELQPKCLGSRGWQVERKEG 696
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+E +GWQ E K G
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAG 219
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 96.7 bits (230), Expect = 3e-21
Identities = 42/77 (54%), Positives = 56/77 (72%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 451
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 452 AFTLGVKQLIVGVNKMD 502
A T G+ L+V +NKMD
Sbjct: 371 ARTQGINHLVVVINKMD 387
Score = 84.2 bits (199), Expect = 2e-17
Identities = 37/69 (53%), Positives = 50/69 (72%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 227
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 228 AERELGITI 254
ERE G T+
Sbjct: 296 EEREKGKTV 304
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 90.6 bits (215), Expect = 2e-19
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +2
Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 436
+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTR
Sbjct: 245 VASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTR 304
Query: 437 EHALLAFTLGVKQLIVGVNKMD 502
EHA L LG+ +++V VNK+D
Sbjct: 305 EHAYLLRALGISEIVVSVNKLD 326
Score = 77.8 bits (183), Expect = 2e-15
Identities = 34/73 (46%), Positives = 50/73 (68%)
Frame = +3
Query: 48 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 227
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 228 AERELGITIILLS 266
ER G+T+ + S
Sbjct: 235 EERARGVTMDVAS 247
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = +1
Query: 517 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLE 642
+SE RF+EIK VS + IK +G+ + V FVPIS G N+++
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQ 372
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 72.9 bits (171), Expect = 4e-14
Identities = 35/78 (44%), Positives = 52/78 (66%)
Frame = +2
Query: 269 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 448
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 449 LAFTLGVKQLIVGVNKMD 502
LA +GVKQ++V +NK+D
Sbjct: 163 LARQVGVKQIVVYINKVD 180
Score = 37.1 bits (82), Expect = 0.003
Identities = 26/71 (36%), Positives = 35/71 (49%)
Frame = +3
Query: 42 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 221
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 222 LKAERELGITI 254
E+ GITI
Sbjct: 94 APEEKARGITI 104
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 290 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 469
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 470 KQLIVGVNKMD 502
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 382
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 36 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 382
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.019
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 442
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 33.9 bits (74), Expect = 0.025
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 240 LGITI 254
GITI
Sbjct: 111 KGITI 115
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.033
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 397
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 31.1 bits (67), Expect = 0.17
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 240 LGITI 254
GITI
Sbjct: 77 RGITI 81
Score = 29.1 bits (62), Expect = 0.70
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +2
Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 472
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 473 QLIVGVNKMD 502
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 263 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 397
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
Score = 26.2 bits (55), Expect = 5.0
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 60 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 240 LGITI 254
GIT+
Sbjct: 104 RGITV 108
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 397
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.53
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 299 IIDAPGHRDFIKNMITGTSQADCAVLIV 382
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/66 (33%), Positives = 31/66 (46%)
Frame = -3
Query: 376 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNMIVIPSSRSAFSLSNTQAYL 197
EH+A+ L S +L IS R N GNI L S + ++ S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 196 KDPLPI 179
K LPI
Sbjct: 62 KALLPI 67
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 337 VLDEISVSRSINDGNIVLASFELPESNMIVIPSSRSAFSLSN 212
V D + SIN N++ A + +P + +PSS +F L N
Sbjct: 87 VYDTLQELMSINSINMLYAFYYMPSGDEEKLPSSWKSFLLEN 128
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 345 VIMFLMKSLCPGASMMVT*YLLVSNFQRAI*L*YLAHAQPLVC 217
+++ L+ SL G ++V + S F AI Y+A++ PL+C
Sbjct: 390 ILLVLLYSLLVGLLILVNVTAISSVFNLAIIALYIAYSGPLMC 432
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 302 IDAPGHRDFIKNMITGTSQADCAVLIV 382
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 340 HVLDEISVSRSINDGNIVLASFELPESNMIVIPSSRSAFS 221
+ +D+ SV R +N + + ELPE + + R AFS
Sbjct: 607 YTIDDDSVERIMNCIRAIYSFEELPEFQTVFLDDMRKAFS 646
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 216 DKLKAERELGITIILLSGSSKLASTMLPS 302
D +KA RELG+ ++ G L ++ +PS
Sbjct: 66 DMIKAARELGLNAYVIPGEKLLDASEIPS 94
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 3.8
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = -3
Query: 502 IHFVYSYDELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAI--SLRGSCDHVLD 329
+H YS+ +L D + E+E + V +DT +EF D I + + D +
Sbjct: 104 LHLRYSFSQLQDFDEENEA---VHMIVPKDT-YEFEVPYHADIPKLIWQTSKDPFDREVM 159
Query: 328 EISVSRSINDGNIVLASFELPESNMIVIPSSRSAFSLSNTQAYLKDPLPISWASFSNF 155
+ + IN + A + +S +VI S + +QAY PLP+ A F +
Sbjct: 160 KYTRFWRINHPSYSHAVLDDEQSKALVISSFGDSSVSKISQAYAMMPLPVLKADFFRY 217
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 506 TNHHTVSPDLRKSRRKYPHTSRRLATTQLLSLSC 607
TN T +PD+ ++PHT +R +T + L + C
Sbjct: 142 TNSST-NPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -3
Query: 310 SINDGNIVLASFELPESNMIVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 131
S++ + L S+ P S + + A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 6.6
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +2
Query: 380 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTNHHTVSPDLRKSRRKYP 559
VA GT E GI NG E+A+ A +I V++ +H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 560 HTSRRLATTQLLSLSCPFL 616
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 222 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 94
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,619
Number of Sequences: 5004
Number of extensions: 66144
Number of successful extensions: 249
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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