Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0314
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             110   1e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          100   1e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 74   1e-13
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               35   0.081
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.19 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              33   0.19 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.43 
SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.3  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   2.3  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              29   5.3  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               28   9.2  
SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)             28   9.2  
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  110 bits (264), Expect = 1e-24
 Identities = 49/82 (59%), Positives = 63/82 (76%)
 Frame = +2

Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 436
           + L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTR
Sbjct: 3   VGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTR 62

Query: 437 EHALLAFTLGVKQLIVGVNKMD 502
           EHA+L  +LGV QLIV +NK+D
Sbjct: 63  EHAILVRSLGVTQLIVAINKLD 84


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  100 bits (240), Expect = 1e-21
 Identities = 43/77 (55%), Positives = 58/77 (75%)
 Frame = +2

Query: 272 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 451
           F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276

Query: 452 AFTLGVKQLIVGVNKMD 502
           A T GVK L++ VNKMD
Sbjct: 277 AKTAGVKHLVILVNKMD 293



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 19/45 (42%), Positives = 31/45 (68%)
 Frame = +3

Query: 120 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITI 254
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+ G T+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTV 210



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +1

Query: 517 YSEPRFEEIKKEVSSYIKKIGYNP 588
           ++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 36  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 182
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = +2

Query: 257 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 358
           IALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 27  IALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/25 (96%), Positives = 24/25 (96%)
 Frame = +3

Query: 180 MGKGSFKYAWVLDKLKAERELGITI 254
           MGKGSFKYAWVLDKLKAERE GITI
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITI 25


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 34.7 bits (76), Expect = 0.081
 Identities = 23/86 (26%), Positives = 34/86 (39%)
 Frame = +2

Query: 254 HIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 433
           HI  +  +     +  +D PGH  F      G    D  +++VAA             QT
Sbjct: 127 HIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QT 179

Query: 434 REHALLAFTLGVKQLIVGVNKMDSTN 511
           +E    A   GV  +I  +NK+D  N
Sbjct: 180 KEAISHAQAAGV-PIIFAINKIDKPN 204


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +2

Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 472
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 473 QLIVGVNKMD 502
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 24/65 (36%), Positives = 30/65 (46%)
 Frame = +3

Query: 60   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 240  LGITI 254
             GIT+
Sbjct: 1987 RGITV 1991


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 302 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 481
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 482 VGVNKMD 502
           +  NK+D
Sbjct: 123 ILQNKID 129


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 36  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 287 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 397
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
 Frame = +2

Query: 332 KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTN 511
           K+ +  T     ++LI         A IS    T + A     + V  ++  + K     
Sbjct: 168 KDGVKLTEYPTTSMLIPTDNPSWTSASISVRNITLKSAGFYRCVAVNPMLPNLPKKSQPA 227

Query: 512 HHTVSPDLRKSRRKYPHTSRRLATTQLLSLSCPFLD-GTETTCWSFNQNALVQGDGRWNV 688
           +  V P +     +   +S  +A  Q  +L C  L   T +  W FN N L+    R+ +
Sbjct: 228 YLQVLPAIDAPHFQVHPSSTTIAELQSAALQCHILGVPTPSVTWEFNSNGLLDSPDRYQL 287

Query: 689 RKG 697
             G
Sbjct: 288 SNG 290


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 299 IIDAPGHRDFIKNMITGTSQADCAVLIV 382
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 293 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 397
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 51  THINIVVIGHVDSGKSTTTGHLIY 122
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +3

Query: 33  KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 206
           K+ +   + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87

Query: 207 WVLDKLKAERE---LGITIILLSGSSKLASTMLPSLMLL 314
                  A  E   L +T++   G + L  T++    ++
Sbjct: 88  LPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGGAQII 126


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +2

Query: 416 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTNHHTVSPDLRKSRRKYPHTSR 571
           +K   T+ H +  +T   +       K  +T  HT+ P   K     PHT++
Sbjct: 19  TKTHTTKPHNIKLYTTKPRTTKPHTTKPHTTKPHTIKPHTTKPHTTKPHTTK 70


>SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)
          Length = 708

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 583 NPAAVAFVPISGWHGDNMLELQPKCLGSRGWQVERKE 693
           NP A+    I   H  N + +Q  C   +GW ++R E
Sbjct: 186 NPIALPLTTIRSKHTVNFVGVQKLCETCKGWSMDRLE 222


>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +2

Query: 344 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTNHHTV 523
           TGT+  D  + +     G+F++ ++ N  +    LLA  +G+ +   G+    + + HT 
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848

Query: 524 S 526
           +
Sbjct: 849 A 849


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,553,407
Number of Sequences: 59808
Number of extensions: 496672
Number of successful extensions: 1335
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)