Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0310
(475 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka... 106 3e-22
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk... 100 1e-20
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost... 96 4e-19
UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|... 95 7e-19
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary... 93 2e-18
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary... 65 7e-10
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ... 54 1e-06
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph... 53 3e-06
UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiel... 51 2e-05
UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge... 50 3e-05
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ... 46 6e-04
UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso... 40 0.037
UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102... 38 0.15
UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella ve... 33 4.3
UniRef50_UPI000007FEA9 Cluster: C03A7.1; n=1; Caenorhabditis ele... 31 9.8
>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
(Human)
Length = 148
Score = 106 bits (254), Expect = 3e-22
Identities = 45/81 (55%), Positives = 55/81 (67%)
Frame = +2
Query: 11 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
M + +KTRKLRGHVS NAGG HHHRIN DKY PGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 191 FHFRKNXNFCPVLNLDKLWTL 253
+H ++N +FCP +NLDKLWTL
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTL 81
Score = 57.6 bits (133), Expect = 1e-07
Identities = 29/66 (43%), Positives = 36/66 (54%)
Frame = +1
Query: 256 SEQTRLKYASAPXGXVPVINIVKAGYYXLXCXGXLPKQPVIVXXXXXXXXXXXXIXDXGG 435
SEQTR+ A G P+I++V++GYY + G LPKQPVIV I GG
Sbjct: 83 SEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGG 142
Query: 436 ACXLSA 453
AC L A
Sbjct: 143 ACVLVA 148
>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
Eukaryota|Rep: 60S ribosomal protein L27a-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 146
Score = 100 bits (240), Expect = 1e-20
Identities = 46/81 (56%), Positives = 52/81 (64%)
Frame = +2
Query: 11 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
MAT+ KK RK RGHVS NAGG HHHRI DKY PGYFGK+GMR
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 191 FHFRKNXNFCPVLNLDKLWTL 253
FH +N FCP++NLDKLW+L
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSL 81
>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
Ostreococcus tauri
Length = 198
Score = 95.9 bits (228), Expect = 4e-19
Identities = 43/79 (54%), Positives = 48/79 (60%)
Frame = +2
Query: 17 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRNFH 196
T K RK RGHVS AGG+HHHRI MDKY PGYFGK+GMR+FH
Sbjct: 54 TQLHKNRKKRGHVSAGHGRIGKHRKHPAGRGMAGGQHHHRIMMDKYHPGYFGKVGMRHFH 113
Query: 197 FRKNXNFCPVLNLDKLWTL 253
KN CP +N+DKLWTL
Sbjct: 114 KLKNQTVCPTINIDKLWTL 132
Score = 38.3 bits (85), Expect = 0.086
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 304 PVINIVKAGYYXLXCXGXLPKQPVIVXXXXXXXXXXXXIXDXGGACXLSA 453
PVI++ G + L G LP QPV+V I + GGAC L+A
Sbjct: 149 PVIDLTDHGIFKLLGKGQLPNQPVVVKCRYISKLAEKKIKEVGGACILTA 198
>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
(Pig roundworm) (Ascaris lumbricoides)
Length = 133
Score = 95.1 bits (226), Expect = 7e-19
Identities = 37/48 (77%), Positives = 42/48 (87%)
Frame = +2
Query: 110 NAGGEHHHRINMDKYXPGYFGKLGMRNFHFRKNXNFCPVLNLDKLWTL 253
NAGG+HHHRIN DKY PGYFGK+GMRNFH RKN +CP +NLDKLW+L
Sbjct: 20 NAGGQHHHRINFDKYHPGYFGKVGMRNFHVRKNGLYCPTVNLDKLWSL 67
Score = 52.8 bits (121), Expect = 4e-06
Identities = 30/66 (45%), Positives = 35/66 (53%)
Frame = +1
Query: 256 SEQTRLKYASAPXGXVPVINIVKAGYYXLXCXGXLPKQPVIVXXXXXXXXXXXXIXDXGG 435
SE+TR YA PVI++VKAGY+ + G LPKQPVIV I GG
Sbjct: 69 SEKTRTTYAEKKD-KAPVIDVVKAGYFKVLGKGLLPKQPVIVKAKFFSRTAEQKIKGVGG 127
Query: 436 ACXLSA 453
AC L A
Sbjct: 128 ACILVA 133
>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
thermophila
Length = 149
Score = 93.5 bits (222), Expect = 2e-18
Identities = 44/83 (53%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +2
Query: 11 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXN--AGGEHHHRINMDKYXPGYFGKLGM 184
M + KKTRKLRGHVS AGG HHHRI M+K+ PGY+GKLGM
Sbjct: 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60
Query: 185 RNFHFRKNXNFCPVLNLDKLWTL 253
R FH +KN CPV+N+DKLW+L
Sbjct: 61 RTFHLKKNPLHCPVVNIDKLWSL 83
Score = 49.2 bits (112), Expect = 5e-05
Identities = 27/66 (40%), Positives = 35/66 (53%)
Frame = +1
Query: 256 SEQTRLKYASAPXGXVPVINIVKAGYYXLXCXGXLPKQPVIVXXXXXXXXXXXXIXDXGG 435
S+ TR KYA VPVI++ KAG++ + G LP QPV+V I GG
Sbjct: 85 SDATRQKYAEDKK-KVPVIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAVGG 143
Query: 436 ACXLSA 453
AC L+A
Sbjct: 144 ACVLTA 149
>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
theta (Cryptomonas phi)
Length = 144
Score = 65.3 bits (152), Expect = 7e-10
Identities = 31/78 (39%), Positives = 42/78 (53%)
Frame = +2
Query: 11 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
M T +++RK RGHVS N+GG+HHH+I +KY +FGK GMR
Sbjct: 1 MPTDIRRSRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRY 60
Query: 191 FHFRKNXNFCPVLNLDKL 244
+ K NF +NLDK+
Sbjct: 61 YRKLKQNNFNKSINLDKI 78
>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 187
Score = 54.4 bits (125), Expect = 1e-06
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +2
Query: 119 GEHHHRINMDKYXPGYFGKLGMRNFHFRKNXNFCPVLNLDKLWTL--ALNRRG 271
G ++ + YFGK+GMR+FH +N +F PV+NLDKLWTL A R+G
Sbjct: 77 GSQEMEVDREIGRDSYFGKVGMRHFHLTRNSSFRPVVNLDKLWTLVPAEQRKG 129
Score = 48.8 bits (111), Expect = 6e-05
Identities = 24/50 (48%), Positives = 25/50 (50%)
Frame = +2
Query: 11 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXP 160
M T KTRK RGHVS AGG+HHHR NMDKY P
Sbjct: 1 MPTHLSKTRKHRGHVSAGNGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHP 50
>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
- Encephalitozoon cuniculi
Length = 147
Score = 53.2 bits (122), Expect = 3e-06
Identities = 27/79 (34%), Positives = 38/79 (48%)
Frame = +2
Query: 11 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
M KKTRKLRGHVS AGG H + ++ P Y GK GMR
Sbjct: 1 MTDRVKKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRV 60
Query: 191 FHFRKNXNFCPVLNLDKLW 247
+H ++N ++ ++ +LW
Sbjct: 61 YHRKENSDYARPISSARLW 79
>UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiella
natans|Rep: Ribosomal protein L27a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 151
Score = 50.8 bits (116), Expect = 2e-05
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +2
Query: 11 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
M T KK+RK+RG S +GG+HHH+I ++Y YF K GMR
Sbjct: 1 MVTKLKKSRKMRGKNSSGHGRINKHRKNPGGKGKSGGQHHHKIIFERYRETYFRKTGMRI 60
Query: 191 FHFRKNXN 214
++ K N
Sbjct: 61 YNLEKTLN 68
>UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole
genome shotgun sequence; n=3; Vitis vinifera|Rep:
Chromosome chr12 scaffold_159, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 151
Score = 49.6 bits (113), Expect = 3e-05
Identities = 18/36 (50%), Positives = 28/36 (77%)
Frame = +2
Query: 146 DKYXPGYFGKLGMRNFHFRKNXNFCPVLNLDKLWTL 253
DK+ PG FGK+GMR+FH + CP++++DKLW++
Sbjct: 28 DKHHPGNFGKVGMRHFHKLRIKLHCPIVHIDKLWSM 63
>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 104
Score = 45.6 bits (103), Expect = 6e-04
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +2
Query: 11 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGK--LGM 184
M TS+KKTR LR HVS H R + PG G +GM
Sbjct: 1 MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39
Query: 185 RNFHFRKNXNFCPVLNLDKLWTLALNR 265
R FH +N +C ++NLDKLW++ L +
Sbjct: 40 RYFHKLRNKFYCQIVNLDKLWSMVLGK 66
>UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal
protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L27a - Rattus
norvegicus
Length = 86
Score = 39.5 bits (88), Expect = 0.037
Identities = 21/51 (41%), Positives = 24/51 (47%)
Frame = +2
Query: 11 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPG 163
M+ +KTRK +GHVS NAGGEH HRIN PG
Sbjct: 1 MSGRLRKTRKFQGHVSDSHSRISKHHKHRGGQRNAGGEHLHRINCYYKVPG 51
>UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102C;
n=2; Saccharomycetaceae|Rep: Putative uncharacterized
protein YGL102C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 142
Score = 37.5 bits (83), Expect = 0.15
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1
Query: 250 CPKLI*VQNWTEIXVLSKVEISHTKFAKVSRXVLVHVDXXXXXXXXXXXXXXXXXVLSDT 71
CP+ + VQ+W L VE+SHT +++ V +HV+ VL+DT
Sbjct: 73 CPQFVQVQDWLPEMSLLLVEVSHTNLTEITWMVFIHVNSVVMLTTGHTSTTGVLSVLTDT 132
Query: 70 TMS 62
T +
Sbjct: 133 TFT 135
>UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 306
Score = 32.7 bits (71), Expect = 4.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 218 RNSCSF*SGNFSYQVCQSIQXGTCPC*FCDGAHHQHYHDLLDAYGA 81
R+SC + F +C+S T PC D H +H DL+D GA
Sbjct: 108 RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 151
>UniRef50_UPI000007FEA9 Cluster: C03A7.1; n=1; Caenorhabditis
elegans|Rep: C03A7.1 - Caenorhabditis elegans
Length = 1443
Score = 31.5 bits (68), Expect = 9.8
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -3
Query: 272 SLVCSELMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQXGTCPC*FCDGAHH 117
SL C+ L SKA+ + D C +G S + C+ T C FC G HH
Sbjct: 759 SLRCT-LSSKAFRQALRDTKLCPICTGRHSIERCRC----TLVCVFCQGMHH 805
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 371,954,077
Number of Sequences: 1657284
Number of extensions: 6068871
Number of successful extensions: 11624
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11609
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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