Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0310
         (475 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   1.9  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   4.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.4  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   4.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.7  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 226 NWTEIXVLSKVEISHTKF 173
           +WTEI   + V  S TKF
Sbjct: 60  SWTEINAFANVSPSKTKF 77


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -3

Query: 260 SELMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQXGTCPC 141
           S+ + K Y++  LDR  CS         +  ++Q     C
Sbjct: 37  SDRLLKNYVNCLLDRGKCSPDGQELKNNLADALQTSCSKC 76


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -3

Query: 317 ILMTGTLPXGADAYFSLVCSELMSKAYLSSKLDRN 213
           +L    +  G   + +    + +++AY + K+DRN
Sbjct: 72  VLGAAVVSKGTTLFMTSQIKKNVTRAYCNKKIDRN 106


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -3

Query: 317 ILMTGTLPXGADAYFSLVCSELMSKAYLSSKLDRN 213
           +L    +  G   + +    + +++AY + K+DRN
Sbjct: 72  VLGAAVVSKGTTLFMTSQIKKNVTRAYCNKKIDRN 106


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -3

Query: 260 SELMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQXGTCPC 141
           S+ + K Y++  LDR  CS         +  ++Q     C
Sbjct: 37  SDRLLKNYVNCLLDRGKCSPDGQELKNNLADALQTSCSKC 76


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 226 NWTEIXVLSKVEISHTKF 173
           +WTEI   + V    TKF
Sbjct: 60  SWTEINAFANVSPPKTKF 77


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 108 PRPPGCLRCFPIRP 67
           P P G L  +P RP
Sbjct: 65  PSPRGALGAYPFRP 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,520
Number of Sequences: 336
Number of extensions: 1608
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)