Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0310
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    87   2e-18
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    86   3e-18

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 42/84 (50%), Positives = 47/84 (55%)
 Frame = +2

Query: 11  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
           M T   KTRKLRGHVS                  AGG  H R + DKY PGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 191 FHFRKNXNFCPVLNLDKLWTLALN 262
           FH  KN  + P +NLD+LWTL  N
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLVPN 84



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +1

Query: 262 QTRLKYASAPXGXVPVINIVKAGYYXLXCXGXLPKQPVIVXXXXXXXXXXXXIXDXGGAC 441
           +TR KY        PVIN++++GY  +   G LP  PVI+            I   GG  
Sbjct: 85  ETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQAGGVV 144

Query: 442 XLSA 453
            L A
Sbjct: 145 ELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 85.8 bits (203), Expect = 3e-18
 Identities = 42/84 (50%), Positives = 47/84 (55%)
 Frame = +2

Query: 11  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
           M T   KTRKLRGHVS                  AGG  H R + DKY PGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 191 FHFRKNXNFCPVLNLDKLWTLALN 262
           FH  KN  + P +NLD+LWTL  N
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLLPN 84



 Score = 36.3 bits (80), Expect = 0.002
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +1

Query: 262 QTRLKYASAPXGXVPVINIVKAGYYXLXCXGXLPKQPVIVXXXXXXXXXXXXIXDXGGAC 441
           + R KY        PVIN++++GY  +   G LP+ PVIV            I   GG  
Sbjct: 85  EARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPVIVQTRYVSRRAEEKIKQAGGVV 144

Query: 442 XLSA 453
            L A
Sbjct: 145 ELIA 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,531,294
Number of Sequences: 5004
Number of extensions: 25283
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)