Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0310
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0027 + 16593133-16593573                                         88   3e-18
02_01_0563 + 4134954-4135388                                           88   3e-18
07_03_1250 - 25183375-25183815                                         88   4e-18
06_03_1077 + 27417255-27417386,27417504-27417557,27417637-274178...    28   3.3  
09_04_0302 + 16501020-16501049,16501568-16501659,16502063-165021...    27   5.8  
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486     27   5.8  
12_02_0319 + 17482431-17482538,17482808-17482861,17482958-174831...    27   7.7  
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626...    27   7.7  

>03_04_0027 + 16593133-16593573
          Length = 146

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 40/81 (49%), Positives = 47/81 (58%)
 Frame = +2

Query: 11  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
           M T  KK RK RGHVS                 NAGG HHHRI  DKY PGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 191 FHFRKNXNFCPVLNLDKLWTL 253
           FH   N   CP +N+++LW++
Sbjct: 61  FHKLSNRFHCPAVNVERLWSM 81


>02_01_0563 + 4134954-4135388
          Length = 144

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 40/81 (49%), Positives = 47/81 (58%)
 Frame = +2

Query: 11  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
           M T  KK RK RGHVS                 NAGG HHHRI  DKY PGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 191 FHFRKNXNFCPVLNLDKLWTL 253
           FH   N   CP +N+++LW++
Sbjct: 61  FHRLSNRFHCPAVNVERLWSM 81


>07_03_1250 - 25183375-25183815
          Length = 146

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 39/81 (48%), Positives = 49/81 (60%)
 Frame = +2

Query: 11  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
           M TS +K RK RGHVS                 NAGG HHHRI  DKY PGYFGK+GMR 
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 191 FHFRKNXNFCPVLNLDKLWTL 253
           FH  +N  + P +N+++LW++
Sbjct: 61  FHRLRNKFYSPAVNVERLWSM 81



 Score = 35.1 bits (77), Expect = 0.029
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 283 SAPXGXVPVINIVKAGYYXLXCXGXLPKQPVIVXXXXXXXXXXXXIXDXGGACXLSA 453
           +A  G  P++++ + GY+ +   G LP++P++V            I   GGA  L+A
Sbjct: 90  AAGAGKAPLLDVTQFGYFKVLGKGLLPEKPIVVKAKLISKVAEKKIKAAGGAVVLTA 146


>06_03_1077 +
           27417255-27417386,27417504-27417557,27417637-27417801,
           27418131-27418496
          Length = 238

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 375 HSKSKVLLKISREENXGXWWCLXTICVNN 461
           ++++K+  KI +++N G WW      +NN
Sbjct: 106 NNQTKISFKIFKDKNDGDWWLYFGYDINN 134


>09_04_0302 +
           16501020-16501049,16501568-16501659,16502063-16502198,
           16502297-16502727,16502950-16503028
          Length = 255

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 137 FCDGAHHQHYHDLLDAYG 84
           +C+G HH H H   D+ G
Sbjct: 132 YCNGGHHHHGHQCYDSVG 149


>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
          Length = 296

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 120 PPALPRPPGCLRCFPIRPCP 61
           PPA P PP  L C P+ P P
Sbjct: 10  PPAPPSPPPALPCDPMPPPP 29


>12_02_0319 +
           17482431-17482538,17482808-17482861,17482958-17483125,
           17483211-17483264,17483354-17483503,17484149-17484523
          Length = 302

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 378 SKSKVLLKISREENXGXWW 434
           ++  + +K+SRE++ G WW
Sbjct: 168 ARQNITIKVSREKSTGDWW 186


>04_03_1020 -
           21761297-21761555,21761630-21761739,21762402-21762635,
           21762710-21762817,21762910-21762969,21763549-21763624,
           21763710-21763870,21764485-21764547,21764657-21764744,
           21765062-21765592,21766344-21766783
          Length = 709

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 123 SPP-ALPRPPGCLRCFPIRPCP 61
           SPP  LP PPG   C P+ P P
Sbjct: 263 SPPHPLPLPPGPATCSPLPPSP 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,403,193
Number of Sequences: 37544
Number of extensions: 182010
Number of successful extensions: 441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)