Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0310
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)                    63   1e-10
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)                    33   0.16 

>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
          Length = 173

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 33/66 (50%), Positives = 37/66 (56%)
 Frame = +1

Query: 256 SEQTRLKYASAPXGXVPVINIVKAGYYXLXCXGXLPKQPVIVXXXXXXXXXXXXIXDXGG 435
           SEQTR  Y +   G VPVI++VKAGYY +   G LPKQPVIV            I   GG
Sbjct: 108 SEQTRQNYKNKKDGPVPVIDVVKAGYYKVLGKGLLPKQPVIVKAKFFSRRAEDKIKAVGG 167

Query: 436 ACXLSA 453
           AC L A
Sbjct: 168 ACVLMA 173



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +2

Query: 158 PGYFGKLGMRNFHFRKNXNFCPVLNLDKLWTL 253
           PGYFGK+GMR+FH  +N    P +NLDK+W+L
Sbjct: 75  PGYFGKVGMRHFHLTRNAYHKPSINLDKVWSL 106


>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 240

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 218 RNSCSF*SGNFSYQVCQSIQXGTCPC*FCDGAHHQHYHDLLDAYGA 81
           R+SC   +  F   +C+S    T PC   D  H +H  DL+D  GA
Sbjct: 52  RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,580,298
Number of Sequences: 59808
Number of extensions: 194472
Number of successful extensions: 330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)