Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0310
(475 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical ... 103 5e-23
AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical ... 39 0.002
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical pr... 28 3.9
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 28 3.9
U28735-3|AAF99958.3| 467|Caenorhabditis elegans Glycosylation r... 27 9.1
U28735-2|AAM69111.1| 543|Caenorhabditis elegans Glycosylation r... 27 9.1
AF082011-1|AAD03023.1| 467|Caenorhabditis elegans UDP-N-acetylg... 27 9.1
>AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical
protein Y37E3.8a protein.
Length = 145
Score = 103 bits (248), Expect = 5e-23
Identities = 44/81 (54%), Positives = 55/81 (67%)
Frame = +2
Query: 11 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
MA + +KTRKLRGHVS NAGG+HHHRIN DKY PGYFGK+GMR
Sbjct: 1 MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60
Query: 191 FHFRKNXNFCPVLNLDKLWTL 253
FH KN ++CP +N+++LW+L
Sbjct: 61 FHLNKNQHYCPTVNVERLWSL 81
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = +1
Query: 286 APXGXVPVINIVKAGYYXLXCXGXLPKQPVIVXXXXXXXXXXXXIXDXGGACXLSA 453
A G PVI+ K GY+ + G LP+ P+IV I GGAC L A
Sbjct: 90 ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 145
>AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical
protein Y37E3.8b protein.
Length = 88
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = +1
Query: 286 APXGXVPVINIVKAGYYXLXCXGXLPKQPVIVXXXXXXXXXXXXIXDXGGACXLSA 453
A G PVI+ K GY+ + G LP+ P+IV I GGAC L A
Sbjct: 33 ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 88
Score = 37.5 bits (83), Expect = 0.005
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 182 MRNFHFRKNXNFCPVLNLDKLWTL 253
MR FH KN ++CP +N+++LW+L
Sbjct: 1 MRVFHLNKNQHYCPTVNVERLWSL 24
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 117 PALPRPPGCLRCFPIRPCP 61
PA P+ P C C P +PCP
Sbjct: 50 PACPQAPSCPVCPPPQPCP 68
>Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical
protein T22C1.9 protein.
Length = 195
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Frame = +2
Query: 14 ATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMD-----KYXPGYFGKL 178
+T KK+ K GH N GG H + M+ ++ P F KL
Sbjct: 127 STKSKKSEKDVGHDDHKKEDVHGDQKDDNKDRNDGGRDSHVVQMEHNSEEEHEPSGFKKL 186
Query: 179 GMRNFHFRK 205
G F+F+K
Sbjct: 187 GKSFFNFKK 195
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 182 MRNFHFRKNXNFCPVLNLDKLWTLALNRRG*SMH 283
+R+FH N N+C ++ + NRRG ++H
Sbjct: 140 LRDFHADVNFNYCIIMRTQQNSPFFSNRRGNALH 173
>U28735-3|AAF99958.3| 467|Caenorhabditis elegans Glycosylation
related protein 12,isoform a protein.
Length = 467
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -3
Query: 113 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 15
HY LD A+ FRYDHV D D+ S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187
>U28735-2|AAM69111.1| 543|Caenorhabditis elegans Glycosylation
related protein 12,isoform b protein.
Length = 543
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -3
Query: 113 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 15
HY LD A+ FRYDHV D D+ S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187
>AF082011-1|AAD03023.1| 467|Caenorhabditis elegans
UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
2-N-acetylglucosaminyltransferase I protein.
Length = 467
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = -3
Query: 113 HYHDLLD-AYGAFRYDHV---RD*HDLSAS*SSFLRW 15
HY LD A+ FRYDHV D D+ S+ RW
Sbjct: 151 HYKWALDKAFKGFRYDHVIVTEDDLDIGNDFFSYFRW 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,672,450
Number of Sequences: 27780
Number of extensions: 151964
Number of successful extensions: 324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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