Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0310
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.9  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 272 SLVCSELMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQXGTCPC*FCD 129
           S+V S+    +YL  KL+RN        +        Q  +C C  CD
Sbjct: 287 SVVVSDYSDYSYLDEKLERNDLDL--EKYEGISSTPSQASSCSCLDCD 332


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 287 ADAYFSLVCSELMSKAYLSSKLDRNS 210
           +D+ +S  CS   S+    S + RNS
Sbjct: 13  SDSGYSNTCSNSQSQRSSGSSISRNS 38


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 287 ADAYFSLVCSELMSKAYLSSKLDRNS 210
           +D+ +S  CS   S+    S + RNS
Sbjct: 13  SDSGYSNTCSNSQSQRSSGSSISRNS 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,490
Number of Sequences: 438
Number of extensions: 1936
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)