Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0310
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...   100   4e-22
At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...    98   3e-21
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    46   2e-05
At2g16100.1 68415.m01846 hypothetical protein                          29   1.6  
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    28   2.8  

>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score =  100 bits (240), Expect = 4e-22
 Identities = 46/81 (56%), Positives = 52/81 (64%)
 Frame = +2

Query: 11  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
           MAT+ KK RK RGHVS                 NAGG HHHRI  DKY PGYFGK+GMR 
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 191 FHFRKNXNFCPVLNLDKLWTL 253
           FH  +N  FCP++NLDKLW+L
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSL 81



 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 280 ASAPXGXVPVINIVKAGYYXLXCXGXLPK-QPVIVXXXXXXXXXXXXIXDXGGACXLSA 453
           A +    VP+I++ + G++ +   G LP+ +P +V            I + GGA  L+A
Sbjct: 88  AKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 45/81 (55%), Positives = 50/81 (61%)
 Frame = +2

Query: 11  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGKLGMRN 190
           M T  KK RK RGHVS                 NAGG HHHRI  DKY PGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 191 FHFRKNXNFCPVLNLDKLWTL 253
           FH  +N  FCP++NLDKLW+L
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSL 81



 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 280 ASAPXGXVPVINIVKAGYYXLXCXGXLPK-QPVIVXXXXXXXXXXXXIXDXGGACXLSA 453
           A +    VP+I++ + G++ +   G LP+ +P +V            I + GGA  L+A
Sbjct: 88  AKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +2

Query: 11  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYXPGYFGK--LGM 184
           M TS+KKTR LR HVS                       H R    +  PG  G   +GM
Sbjct: 1   MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39

Query: 185 RNFHFRKNXNFCPVLNLDKLWTLALNR 265
           R FH  +N  +C ++NLDKLW++ L +
Sbjct: 40  RYFHKLRNKFYCQIVNLDKLWSMVLGK 66


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 124 APSQNQHGQVPXWILWQTW 180
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 127 PSQNQHGQVPXWILWQTWYEKFPL-*KEXEFLSSFELR*ALDISSEQTRLKYASAPXGXV 303
           P   +  Q+  W+LW+ W  +  L  +  EF +   LR A D   E+ R++  +   G  
Sbjct: 351 PQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAED-DLEEWRIRTEAESCGTK 409

Query: 304 PVINIVKAG 330
           P +N    G
Sbjct: 410 PQVNRSSCG 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,190,370
Number of Sequences: 28952
Number of extensions: 141136
Number of successful extensions: 259
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)