Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0309
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d... 126 2e-30
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 126 3e-30
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 28 1.2
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 27 2.0
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch... 27 2.7
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 27 3.5
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 8.1
>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 380
Score = 126 bits (305), Expect = 2e-30
Identities = 64/139 (46%), Positives = 86/139 (61%), Gaps = 1/139 (0%)
Frame = +3
Query: 255 VCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFC 434
VCHTDAYTLSGKDPEG+FPV+L T+V+ GD V+ LY P+C TCKFC
Sbjct: 49 VCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFC 108
Query: 435 LNPKTNLCQKVRSTQGQGVMPDGTSDSAVKDRNSTISWVVQHSVSTQLF*KFLSVKLQRL 614
+ KTNLC ++R+TQG+G+MPDGTS + + N+ + ++ + S +SV
Sbjct: 109 KSGKTNLCGRIRTTQGKGLMPDGTSRFSC-NGNTLLHFMGCSTFSEYTVVADISVVAIER 167
Query: 615 LH*IKFVC-WGCGVPTGYG 668
L + VC GCG+ TGYG
Sbjct: 168 LAPLDSVCLLGCGITTGYG 186
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = +1
Query: 127 TVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATG 255
T GK+I C AAVAW+ PLSIE ++V PP+ EVR+KI +G
Sbjct: 6 TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSG 48
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 126 bits (304), Expect = 3e-30
Identities = 62/139 (44%), Positives = 84/139 (60%), Gaps = 1/139 (0%)
Frame = +3
Query: 255 VCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFC 434
VCHTDAYTLSG DPEG FP+VL +V+PGDHV+ LY P+C CKFC
Sbjct: 46 VCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFC 105
Query: 435 LNPKTNLCQKVRSTQGQGVMPDGTSDSAVKDRNSTISWVVQHSVSTQLF*KFLSVKLQRL 614
+ KTNLC K+R TQG+G+MPDGTS + +D+ + + ++ S S +S+
Sbjct: 106 RSGKTNLCSKIRETQGRGLMPDGTSRFSCRDK-TLLHYMGCSSFSQYTVVADISLVAISH 164
Query: 615 LH*IKFVC-WGCGVPTGYG 668
++ +C GCGV TG+G
Sbjct: 165 SAPLRSICLLGCGVTTGFG 183
Score = 58.4 bits (135), Expect = 9e-10
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +1
Query: 121 MSTVGKVIKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKI 243
MS GK I C AAVAW A +PLSIE+I+V PPKA EVRVK+
Sbjct: 1 MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKV 41
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 366 TSVKPGDHVVPLYVPQCNTCKFCLNPKTNLC 458
+S+KPGD V C C +C + + NLC
Sbjct: 81 SSLKPGDPVAVEPGCVCRLCDYCRSGRYNLC 111
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 145 KCLAAVAWEAGKPL-SIEEIEVDPPKAGEVRVKITATGSAILTRIH 279
K ++ +AWE KPL + E+I D +GE+ V T +G ++ H
Sbjct: 63 KVISCIAWEQ-KPLYASEQITTDISGSGEILVLGTNSGEILIYSEH 107
>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
Crs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 229
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 17 ICLIGF*YFVTS--SSKRFIARL*FQHFVIGSCPVQSCQQ 130
+ L+ F +V S S + F+ L FQH S P +SC Q
Sbjct: 175 LALLNFDIYVISLPSVESFLTPLIFQHVFFKSLPSESCDQ 214
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 713 AQFDPGSTLAVFKAXSITCRYTASPANKLYLMEQPLQLYREKFLEQLCTD 564
A DP S L + I C + SP++ + L+ +PLQL + +EQ C D
Sbjct: 759 AHVDPESDLG--RVIKI-CDWYQSPSSDV-LLSKPLQLNSSEEMEQQCID 804
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 187 SIEEIEVDPPKAGEVRVKITATGSAILTRIHSPE 288
+++EIEVDP + +IT G + + SPE
Sbjct: 371 NVDEIEVDPQVDKVLSSRITFDGGKTWSTVASPE 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,777
Number of Sequences: 5004
Number of extensions: 58663
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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