Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0309
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.057
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)            30   2.1  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   29   3.7  
SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)                   29   4.9  
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.6  

>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 29/38 (76%), Positives = 30/38 (78%)
 Frame = +1

Query: 142 IKCLAAVAWEAGKPLSIEEIEVDPPKAGEVRVKITATG 255
           I C AAVAWE  KPLSIE IEV PPKA EVR+KI ATG
Sbjct: 2   ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILATG 39



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 22/42 (52%), Positives = 24/42 (57%)
 Frame = +3

Query: 255 VCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKP 380
           VCHTDAYTLSG DPEG+FP +L               T VKP
Sbjct: 40  VCHTDAYTLSGVDPEGLFPCILGHEGGGIVESVGEGVTKVKP 81


>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 24/83 (28%), Positives = 32/83 (38%)
 Frame = +3

Query: 255 VCHTDAYTLSGKDPEGVFPVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFC 434
           +C  D   L G+ P     VVL                +V  GD VV      CNTCK C
Sbjct: 85  ICDRDLQILEGELPAAKC-VVLGHEFSGVVSDVGSDVKNVSIGDRVVVNPNSSCNTCKAC 143

Query: 435 LNPKTNLCQKVRSTQGQGVMPDG 503
              + + C+K  +    GV  +G
Sbjct: 144 RRGQPHFCEKGGTGSAIGVWKNG 166


>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 372 VKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 503
           V  GD VV   +  C  C FCL  + +LC+        G+  +G
Sbjct: 75  VSVGDRVVINPLTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNG 118


>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 309 PVVLXXXXXXXXXXXXXXXTSVKPGDHVVPLYVPQCNTCKFCLNPKTNLCQKV 467
           P+VL               + +K GD V       C TC +C   + NLC K+
Sbjct: 52  PMVLGHESSGVICAVGEGVSDLKEGDRVAIEPGTPCRTCSYCKKGRYNLCAKM 104


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 269 VSMADPVAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALD 108
           VSMA+      T+T P F    S    +  +P+ H    K L    T ++T  D
Sbjct: 436 VSMAERCYTFQTKTPPRFRSRRSQEQSEDDVPSQHGKQKKGLTCPKTPNLTTSD 489


>SB_33746| Best HMM Match : MAM (HMM E-Value=8.4e-13)
          Length = 618

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 305 HSLRIFSGECIRVSMADPVAVILTRTSPAFGGSTSISSMDSGLPASHAT 159
           H+L +FS  C +     P   ++ +    FGG T  S  + G P S +T
Sbjct: 241 HTLDVFSNNCTKKG---PTVTLIRKGKYIFGGFTDRSWRNHGAPESSST 286


>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 251 VAVILTRTSPAFGGSTSISSMDSGLPASHATAAKHLITLPTVDMTALDN 105
           V+V     S + G  +S SS    +P+S  +      T+PT DM A  N
Sbjct: 3   VSVAENTPSSSSGDPSSHSSQSQSVPSSMDSGGSTAATVPTQDMVAFAN 51


>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1298

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -2

Query: 526  SFTAESLVPSGITP*P*VERTFWHKLVFGFKQNLHVLHCGTYRGTTWSPGLTEV 365
            + +A  LV   I P P +       L FG+  NL+    GTY   TW P +  V
Sbjct: 1076 TISASELVAGCILPLPYLSYRLLRHL-FGYSHNLN----GTYTDATWKPSVERV 1124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,890,059
Number of Sequences: 59808
Number of extensions: 487971
Number of successful extensions: 1071
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)