Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0309
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.8  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = -1

Query: 305 HSLRIFSGECIRVSMADPVAVILTRTSPAFGGSTSISSMDS 183
           H  R+    C  + + DP   + T  S     S    S+DS
Sbjct: 384 HGQRVMVRTCNGLELRDPSLFVETSASELVESSVLFPSLDS 424


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 560 FSQYTVVLEISLCKV 604
           + QY  VL +SLCK+
Sbjct: 102 WQQYPWVLGVSLCKI 116


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 242 ILTRTSPAFGGSTS 201
           +L R SPAF G++S
Sbjct: 920 LLERASPAFSGTSS 933


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,134
Number of Sequences: 438
Number of extensions: 4098
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)