Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0307
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 161 5e-40
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 146 1e-35
07_01_0310 + 2209084-2209554 31 1.2
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 30 2.0
07_01_0312 + 2214050-2214556 29 3.5
03_05_0583 - 25838016-25838684 28 6.2
06_01_1182 + 10150911-10150979,10150984-10151457 28 8.1
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 161 bits (391), Expect = 5e-40
Identities = 101/213 (47%), Positives = 122/213 (57%), Gaps = 14/213 (6%)
Frame = +3
Query: 69 RDXWHXXRATGGKRAPIRKKRXYELGRPAA--KHQARPSANPLR----SFTWWXY*VPCX 230
RD H RATGGK+ RKKR YELGR A K + + +R + W +
Sbjct: 5 RDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLD-- 62
Query: 231 ASGHR*LLWGSXXSTRKTRIIDVVXNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYT 410
+G+ WGS TRKTRI+DVV NASNN LVRT+TLVK+AIV VDA PF+QWY +HY
Sbjct: 63 -TGN--YSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYG 119
Query: 411 LPLGRXK--------GAKLTEAEEAIINKKRSQKTARKYLAGNVLLRLRVL*KSNSTQGV 566
+ +GR K A+ E E A K+S RK L + G
Sbjct: 120 VDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGR 179
Query: 567 CWACVASRPGQCGRADGYILEGKELEFYLKKDQ 665
AC++SRPGQCGRADGYILEGKELEFY+KK Q
Sbjct: 180 LLACISSRPGQCGRADGYILEGKELEFYMKKLQ 212
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 103 GNVRPYARRGSMS*GVPLPNTRLGPQR-IHSVRSRGGXTKYRALRLDTGNFS 255
G + + ++ G NT+L + + VR RGG K+RALRLDTGN+S
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYS 67
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 146 bits (355), Expect = 1e-35
Identities = 101/228 (44%), Positives = 126/228 (55%), Gaps = 29/228 (12%)
Frame = +3
Query: 69 RDXWHXXRATGGKRAPIRKKRXYELGRPAAKHQARPSANPLRSFTWWXY*VPCXA----S 236
RD H RATGGK+ RKKR YELGR A + S +R V A +
Sbjct: 5 RDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLS-SNKTVRRVRVRGGNVKWRALRLDT 63
Query: 237 GHR*LLWGSXXSTRKTRIIDVVXNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLP 416
G+ WGS TRKTRI+DVV NASNN LVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 64 GN--YSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVD 121
Query: 417 LGRXKGAKLT--EAEEAI-------------INKKRSQKTARKYLAGNVLLRLRVL*KSN 551
+GR K A +AE A+ + + ++ T + N ++R +
Sbjct: 122 IGRKKKAPAAKKDAEHALGKIRCLFIGLYVMLKGQDAEATTEEAKKSNHVVRKLEKRQQG 181
Query: 552 ST----------QGVCWACVASRPGQCGRADGYILEGKELEFYLKKDQ 665
T G AC++SRPGQCGRADGYILEGKELEFY+KK Q
Sbjct: 182 RTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ 229
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 103 GNVRPYARRGSMS*GVPLPNTRLGPQR-IHSVRSRGGXTKYRALRLDTGNFS 255
G + + ++ G NT+L + + VR RGG K+RALRLDTGN+S
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYS 67
>07_01_0310 + 2209084-2209554
Length = 156
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 146 P*LILPLLAYGRTFPTGGPXXMPVIPLVPNSCSPGDPLVPR 24
P + LP + PT MP +P VPN+ P P VP+
Sbjct: 82 PAVALPPMPAVPAVPTATLPPMPAVPAVPNAVLPPIPAVPK 122
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 198 TNGVDSLRAEPGVWQRDALTHTXSSCVWAHVSHRWPXXYASXPARAEFLQP 46
T GV S+ A P V + AL SCV+ H S W ++ P+ ++QP
Sbjct: 706 TLGVSSVAASPRVTEDVAL-----SCVFLHYSLTWELIPSAQPSFVRYVQP 751
>07_01_0312 + 2214050-2214556
Length = 168
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -1
Query: 173 PSLVFGSGTP*LILPLLAYGRTFPTGGPXXMPVIPLVPNSCSPGDPLVPR 24
P+ V P + LP + P MP +P VPN+ P P VP+
Sbjct: 37 PAAVPVPTVPAVTLPPMPAIPAVPAATLPPMPAVPTVPNAALPPMPAVPK 86
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 104 PTGGPXXMPVIPLVPNSCSPGDPLVPR 24
P MP +P VPN+ P P VP+
Sbjct: 108 PAASLPPMPAVPAVPNAVLPPMPAVPK 134
>03_05_0583 - 25838016-25838684
Length = 222
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -1
Query: 170 SLVFGSGTP*LILPLLAYGRTFPTGGPXXMPVIPL 66
SLV G P I+P A GR P GGP I L
Sbjct: 124 SLVDGFNAPMAIVPAAAGGRRCPRGGPRCAAEITL 158
>06_01_1182 + 10150911-10150979,10150984-10151457
Length = 180
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 536 ALEEQFHTGRLLGLRGESPRSVW 604
A+E + H G +G+RG PR W
Sbjct: 28 AVEAEVHNGGRVGVRGSKPREGW 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,641,773
Number of Sequences: 37544
Number of extensions: 352149
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -