Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0307
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   176   1e-44
AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical...    29   3.2  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  176 bits (428), Expect = 1e-44
 Identities = 98/201 (48%), Positives = 121/201 (60%), Gaps = 4/201 (1%)
 Frame = +3

Query: 69  RDXWHXXRATGGKRAPIRKKRXYELGRPAAKHQARPSANPLRSFTWWX----Y*VPCXAS 236
           RD WH    TG  +    KKR +ELGRPAA    +  A+ +R          Y      S
Sbjct: 5   RDSWHKRYKTGATQPVPHKKRKFELGRPAAN--TKIGAHRVRLVRTRGGNEKYRALRLDS 62

Query: 237 GHR*LLWGSXXSTRKTRIIDVVXNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLP 416
           G+    W S  +TRKTRI+D + NA+NN LVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 63  GN--FSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120

Query: 417 LGRXKGAKLTEAEEAIINKKRSQKTARKYLAGNVLLRLRVL*KSNSTQGVCWACVASRPG 596
           L R K AKL+E + AI+NKKRS  T +KY        +  L       G   A ++S PG
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPG 180

Query: 597 QCGRADGYILEGKELEFYLKK 659
           Q G+A+GYILEGKEL+FYL+K
Sbjct: 181 QVGQANGYILEGKELDFYLRK 201



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = +1

Query: 145 GVPLPNTRLGPQRIHSVRSRGGXTKYRALRLDTGNFS 255
           G P  NT++G  R+  VR+RGG  KYRALRLD+GNFS
Sbjct: 30  GRPAANTKIGAHRVRLVRTRGGNEKYRALRLDSGNFS 66


>AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical
           protein Y41C4A.11 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 184 FAEGRAWCLAAGRPNSYXLFLRMGA 110
           F +GRAWC+AAG+ ++  +    GA
Sbjct: 357 FEKGRAWCVAAGKSDAIAVGFDSGA 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,958,955
Number of Sequences: 27780
Number of extensions: 270822
Number of successful extensions: 692
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)