Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0307
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   163   1e-40
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   157   9e-39
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.2  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  163 bits (396), Expect = 1e-40
 Identities = 105/213 (49%), Positives = 124/213 (58%), Gaps = 14/213 (6%)
 Frame = +3

Query: 69  RDXWHXXRATGGKRAPIRKKRXYELGRPAAKHQARPSANPLRSFTWWXY*VPCXA----S 236
           RD  H  RATGGK+   RKKR YE+GR  A  +   S   +R        V   A    +
Sbjct: 5   RDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLS-SNKTVRRIRVRGGNVKWRALRLDT 63

Query: 237 GHR*LLWGSXXSTRKTRIIDVVXNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLP 416
           G+    WGS  +TRKTR++DVV NASNN LVRTKTLVK+AIV VDA PF+QWY SHY + 
Sbjct: 64  GN--YSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVE 121

Query: 417 LGR-XKGAKLT-----EAEEAII----NKKRSQKTARKYLAGNVLLRLRVL*KSNSTQGV 566
           LGR  K A  T     E EEA +      K+S    RK  +      L    +     G 
Sbjct: 122 LGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGR 181

Query: 567 CWACVASRPGQCGRADGYILEGKELEFYLKKDQ 665
             AC++SRPGQCGRADGYILEGKELEFY+KK Q
Sbjct: 182 LLACISSRPGQCGRADGYILEGKELEFYMKKIQ 214



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +1

Query: 103 GNVRPYARRGSMS*GVPLPNTRLGPQR-IHSVRSRGGXTKYRALRLDTGNFS 255
           G  + + ++     G    NT+L   + +  +R RGG  K+RALRLDTGN+S
Sbjct: 16  GKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYS 67


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  157 bits (380), Expect = 9e-39
 Identities = 99/203 (48%), Positives = 116/203 (57%), Gaps = 4/203 (1%)
 Frame = +3

Query: 69  RDXWHXXRATGGKRAPIRKKRXYELGRPAAKHQARPSANPLRSFTWWXY*VPCXA----S 236
           RD  H  RATGGK+   RKKR YELGR  A  +   S   +R        V   A    +
Sbjct: 5   RDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLS-SNKTVRRIRVRGGNVKWRALRLDT 63

Query: 237 GHR*LLWGSXXSTRKTRIIDVVXNASNNXLVRTKTLVKNAIVVVDATPFRQWYESHYTLP 416
           G+    WGS   TRKTRI+DV  NASNN LVRT+TLVK+AIV VDA PF+Q Y  HY + 
Sbjct: 64  GN--FSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVD 121

Query: 417 LGRXKGAKLTEAEEAIINKKRSQKTARKYLAGNVLLRLRVL*KSNSTQGVCWACVASRPG 596
           +GR K  +    EE     K+S    RK         L    +   + G   AC+ASRPG
Sbjct: 122 IGRKKKGEAVTTEEV----KKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPG 177

Query: 597 QCGRADGYILEGKELEFYLKKDQ 665
           QCGRADGYILEGKELEFY+KK Q
Sbjct: 178 QCGRADGYILEGKELEFYMKKLQ 200



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +1

Query: 160 NTRLGPQR-IHSVRSRGGXTKYRALRLDTGNFS 255
           NT+L   + +  +R RGG  K+RALRLDTGNFS
Sbjct: 35  NTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFS 67


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 324 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRXKGAKLTEA 452
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,166
Number of Sequences: 28952
Number of extensions: 251458
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)