Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0305
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   2.6  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   6.0  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    25   7.9  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.9  

>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 455 LQVKGXXGNQNEESSTPSNQSRLRGQAPGRH 547
           ++VKG    QNE  S P NQ  + G AP  H
Sbjct: 242 MEVKGRVCTQNEYKSDPKNQYNILG-APKPH 271


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 422 ELASFISTAEQLQVKGXXGNQNEESSTPSNQSRLRGQAP---GRHNKDNSVMTKLETDLD 592
           E+A   ++A+  Q     G QN  ++ PS+ + +  +AP      + D S    L +D  
Sbjct: 293 EVAQGAASAKAPQQTTQQGTQNSANAEPSSSASVPAEAPETEAEQSIDVSSDIGLRSD-S 351

Query: 593 SKPSSTP 613
           SKP+  P
Sbjct: 352 SKPNEAP 358


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 22/111 (19%), Positives = 44/111 (39%)
 Frame = +2

Query: 290 PYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKG 469
           P+F          +P++ ++ +SH +LR+        + N   +E+   I+   +++ + 
Sbjct: 14  PFFFRERCFQTLLNPVIAIRQLSHGSLRNSRSCRIDAKSNTLTKEIFPKINNEFKIKNRF 73

Query: 470 XXGNQNEESSTPSNQSRLRGQAPGRHNKDNSVMTKLETDLDSKPSSTPVXR 622
                  +  T   Q   +G     + KD S   +LE   + KP    V R
Sbjct: 74  YSSKLANDQFTLQEQCDEKGIPFILYVKD-SAKKQLEKIAERKPEENSVLR 123


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/81 (22%), Positives = 35/81 (43%)
 Frame = +2

Query: 296  FQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGXX 475
            + E +    T    +F +D S     DL       ++NV+ + L+SF+ ++E L  +   
Sbjct: 1703 YNEFYSQLDTSTSDIF-QDTSVDGFPDL---QVSSDINVRNDRLSSFVMSSEDL--RSSD 1756

Query: 476  GNQNEESSTPSNQSRLRGQAP 538
            G+     S     S +  ++P
Sbjct: 1757 GHPENSDSVLETISSVHHRSP 1777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,806
Number of Sequences: 5004
Number of extensions: 53326
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)